211 related articles for article (PubMed ID: 29185922)
1. Incorporation of unique molecular identifiers in TruSeq adapters improves the accuracy of quantitative sequencing.
Hong J; Gresham D
Biotechniques; 2017 Nov; 63(5):221-226. PubMed ID: 29185922
[TBL] [Abstract][Full Text] [Related]
2. Elimination of PCR duplicates in RNA-seq and small RNA-seq using unique molecular identifiers.
Fu Y; Wu PH; Beane T; Zamore PD; Weng Z
BMC Genomics; 2018 Jul; 19(1):531. PubMed ID: 30001700
[TBL] [Abstract][Full Text] [Related]
3. Je, a versatile suite to handle multiplexed NGS libraries with unique molecular identifiers.
Girardot C; Scholtalbers J; Sauer S; Su SY; Furlong EE
BMC Bioinformatics; 2016 Oct; 17(1):419. PubMed ID: 27717304
[TBL] [Abstract][Full Text] [Related]
4. Performance evaluation of commercial library construction kits for PCR-based targeted sequencing using a unique molecular identifier.
Chung J; Lee KW; Lee C; Shin SH; Kyung S; Jeon HJ; Kim SY; Cho E; Yoo CE; Son DS; Park WY; Park D
BMC Genomics; 2019 Mar; 20(1):216. PubMed ID: 30871467
[TBL] [Abstract][Full Text] [Related]
5. Systematic comparison of small RNA library preparation protocols for next-generation sequencing.
Dard-Dascot C; Naquin D; d'Aubenton-Carafa Y; Alix K; Thermes C; van Dijk E
BMC Genomics; 2018 Feb; 19(1):118. PubMed ID: 29402217
[TBL] [Abstract][Full Text] [Related]
6. Library preparation methods for next-generation sequencing: tone down the bias.
van Dijk EL; Jaszczyszyn Y; Thermes C
Exp Cell Res; 2014 Mar; 322(1):12-20. PubMed ID: 24440557
[TBL] [Abstract][Full Text] [Related]
7. Gencore: an efficient tool to generate consensus reads for error suppressing and duplicate removing of NGS data.
Chen S; Zhou Y; Chen Y; Huang T; Liao W; Xu Y; Li Z; Gu J
BMC Bioinformatics; 2019 Dec; 20(Suppl 23):606. PubMed ID: 31881822
[TBL] [Abstract][Full Text] [Related]
8. Unique, dual-indexed sequencing adapters with UMIs effectively eliminate index cross-talk and significantly improve sensitivity of massively parallel sequencing.
MacConaill LE; Burns RT; Nag A; Coleman HA; Slevin MK; Giorda K; Light M; Lai K; Jarosz M; McNeill MS; Ducar MD; Meyerson M; Thorner AR
BMC Genomics; 2018 Jan; 19(1):30. PubMed ID: 29310587
[TBL] [Abstract][Full Text] [Related]
9. Cross-platform compatibility of Hi-Plex, a streamlined approach for targeted massively parallel sequencing.
Nguyen-Dumont T; Pope BJ; Hammet F; Mahmoodi M; Tsimiklis H; Southey MC; Park DJ
Anal Biochem; 2013 Nov; 442(2):127-9. PubMed ID: 23933242
[TBL] [Abstract][Full Text] [Related]
10. Alignment-free clustering of UMI tagged DNA molecules.
Orabi B; Erhan E; McConeghy B; Volik SV; Le Bihan S; Bell R; Collins CC; Chauve C; Hach F
Bioinformatics; 2019 Jun; 35(11):1829-1836. PubMed ID: 30351359
[TBL] [Abstract][Full Text] [Related]
11. Quantitative bias in Illumina TruSeq and a novel post amplification barcoding strategy for multiplexed DNA and small RNA deep sequencing.
Van Nieuwerburgh F; Soetaert S; Podshivalova K; Ay-Lin Wang E; Schaffer L; Deforce D; Salomon DR; Head SR; Ordoukhanian P
PLoS One; 2011; 6(10):e26969. PubMed ID: 22046424
[TBL] [Abstract][Full Text] [Related]
12. Detrimental effects of duplicate reads and low complexity regions on RNA- and ChIP-seq data.
Dozmorov MG; Adrianto I; Giles CB; Glass E; Glenn SB; Montgomery C; Sivils KL; Olson LE; Iwayama T; Freeman WM; Lessard CJ; Wren JD
BMC Bioinformatics; 2015; 16 Suppl 13(Suppl 13):S10. PubMed ID: 26423047
[TBL] [Abstract][Full Text] [Related]
13. The impact of amplification on differential expression analyses by RNA-seq.
Parekh S; Ziegenhain C; Vieth B; Enard W; Hellmann I
Sci Rep; 2016 May; 6():25533. PubMed ID: 27156886
[TBL] [Abstract][Full Text] [Related]
14. RNA Fragmentation and Sequencing (RF-Seq): Cost-Effective, Time-Efficient, and High-Throughput 3' mRNA Sequencing Library Construction in a Single Tube.
Veeranagouda Y; Remaury A; Guillemot JC; Didier M
Curr Protoc Mol Biol; 2019 Dec; 129(1):e109. PubMed ID: 31763778
[TBL] [Abstract][Full Text] [Related]
15. UMI-tools: modeling sequencing errors in Unique Molecular Identifiers to improve quantification accuracy.
Smith T; Heger A; Sudbery I
Genome Res; 2017 Mar; 27(3):491-499. PubMed ID: 28100584
[TBL] [Abstract][Full Text] [Related]
16. ATAC-seq with unique molecular identifiers improves quantification and footprinting.
Zhu T; Liao K; Zhou R; Xia C; Xie W
Commun Biol; 2020 Nov; 3(1):675. PubMed ID: 33188264
[TBL] [Abstract][Full Text] [Related]
17. Biased estimates of clonal evolution and subclonal heterogeneity can arise from PCR duplicates in deep sequencing experiments.
Smith EN; Jepsen K; Khosroheidari M; Rassenti LZ; D'Antonio M; Ghia EM; Carson DA; Jamieson CH; Kipps TJ; Frazer KA
Genome Biol; 2014 Aug; 15(8):420. PubMed ID: 25103687
[TBL] [Abstract][Full Text] [Related]
18. TRUmiCount: correctly counting absolute numbers of molecules using unique molecular identifiers.
Pflug FG; von Haeseler A
Bioinformatics; 2018 Sep; 34(18):3137-3144. PubMed ID: 29672674
[TBL] [Abstract][Full Text] [Related]
19. Reducing noise and stutter in short tandem repeat loci with unique molecular identifiers.
Woerner AE; Mandape S; King JL; Muenzler M; Crysup B; Budowle B
Forensic Sci Int Genet; 2021 Mar; 51():102459. PubMed ID: 33429137
[TBL] [Abstract][Full Text] [Related]
20. AmpUMI: design and analysis of unique molecular identifiers for deep amplicon sequencing.
Clement K; Farouni R; Bauer DE; Pinello L
Bioinformatics; 2018 Jul; 34(13):i202-i210. PubMed ID: 29949956
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]