These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
2. stringMLST: a fast k-mer based tool for multilocus sequence typing. Gupta A; Jordan IK; Rishishwar L Bioinformatics; 2017 Jan; 33(1):119-121. PubMed ID: 27605103 [TBL] [Abstract][Full Text] [Related]
3. Using 2k + 2 bubble searches to find single nucleotide polymorphisms in k-mer graphs. Younsi R; MacLean D Bioinformatics; 2015 Mar; 31(5):642-6. PubMed ID: 25344498 [TBL] [Abstract][Full Text] [Related]
4. Toward perfect reads: self-correction of short reads via mapping on de Bruijn graphs. Limasset A; Flot JF; Peterlongo P Bioinformatics; 2020 Mar; 36(5):1374-1381. PubMed ID: 30785192 [TBL] [Abstract][Full Text] [Related]
5. Integrating long-range connectivity information into de Bruijn graphs. Turner I; Garimella KV; Iqbal Z; McVean G Bioinformatics; 2018 Aug; 34(15):2556-2565. PubMed ID: 29554215 [TBL] [Abstract][Full Text] [Related]
6. A space and time-efficient index for the compacted colored de Bruijn graph. Almodaresi F; Sarkar H; Srivastava A; Patro R Bioinformatics; 2018 Jul; 34(13):i169-i177. PubMed ID: 29949982 [TBL] [Abstract][Full Text] [Related]
7. Modelling haplotypes with respect to reference cohort variation graphs. Rosen Y; Eizenga J; Paten B Bioinformatics; 2017 Jul; 33(14):i118-i123. PubMed ID: 28881971 [TBL] [Abstract][Full Text] [Related]
9. GraphBin: refined binning of metagenomic contigs using assembly graphs. Mallawaarachchi V; Wickramarachchi A; Lin Y Bioinformatics; 2020 Jun; 36(11):3307-3313. PubMed ID: 32167528 [TBL] [Abstract][Full Text] [Related]
10. Bandage: interactive visualization of de novo genome assemblies. Wick RR; Schultz MB; Zobel J; Holt KE Bioinformatics; 2015 Oct; 31(20):3350-2. PubMed ID: 26099265 [TBL] [Abstract][Full Text] [Related]
11. deBGR: an efficient and near-exact representation of the weighted de Bruijn graph. Pandey P; Bender MA; Johnson R; Patro R Bioinformatics; 2017 Jul; 33(14):i133-i141. PubMed ID: 28881995 [TBL] [Abstract][Full Text] [Related]
12. ntCard: a streaming algorithm for cardinality estimation in genomics data. Mohamadi H; Khan H; Birol I Bioinformatics; 2017 May; 33(9):1324-1330. PubMed ID: 28453674 [TBL] [Abstract][Full Text] [Related]
16. Leveraging known genomic variants to improve detection of variants, especially close-by Indels. Vo NS; Phan V Bioinformatics; 2018 Sep; 34(17):2918-2926. PubMed ID: 29590294 [TBL] [Abstract][Full Text] [Related]
17. Reconstructing viral haplotypes using long reads. Cai D; Sun Y Bioinformatics; 2022 Apr; 38(8):2127-2134. PubMed ID: 35157018 [TBL] [Abstract][Full Text] [Related]
18. Positional bias in variant calls against draft reference assemblies. Briskine RV; Shimizu KK BMC Genomics; 2017 Mar; 18(1):263. PubMed ID: 28351369 [TBL] [Abstract][Full Text] [Related]
19. An accurate algorithm for the detection of DNA fragments from dilution pool sequencing experiments. Bansal V Bioinformatics; 2018 Jan; 34(1):155-162. PubMed ID: 29036419 [TBL] [Abstract][Full Text] [Related]
20. AlignGraph: algorithm for secondary de novo genome assembly guided by closely related references. Bao E; Jiang T; Girke T Bioinformatics; 2014 Jun; 30(12):i319-i328. PubMed ID: 24932000 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]