These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

157 related articles for article (PubMed ID: 29194524)

  • 1. Functional sequencing read annotation for high precision microbiome analysis.
    Zhu C; Miller M; Marpaka S; Vaysberg P; Rühlemann MC; Wu G; Heinsen FA; Tempel M; Zhao L; Lieb W; Franke A; Bromberg Y
    Nucleic Acids Res; 2018 Feb; 46(4):e23. PubMed ID: 29194524
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Metatranscriptomic analysis of diverse microbial communities reveals core metabolic pathways and microbiome-specific functionality.
    Jiang Y; Xiong X; Danska J; Parkinson J
    Microbiome; 2016 Jan; 4():2. PubMed ID: 26757703
    [TBL] [Abstract][Full Text] [Related]  

  • 3. A multi-source domain annotation pipeline for quantitative metagenomic and metatranscriptomic functional profiling.
    Ugarte A; Vicedomini R; Bernardes J; Carbone A
    Microbiome; 2018 Aug; 6(1):149. PubMed ID: 30153857
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Automated and Accurate Estimation of Gene Family Abundance from Shotgun Metagenomes.
    Nayfach S; Bradley PH; Wyman SK; Laurent TJ; Williams A; Eisen JA; Pollard KS; Sharpton TJ
    PLoS Comput Biol; 2015 Nov; 11(11):e1004573. PubMed ID: 26565399
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Comparative analysis of functional metagenomic annotation and the mappability of short reads.
    Carr R; Borenstein E
    PLoS One; 2014; 9(8):e105776. PubMed ID: 25148512
    [TBL] [Abstract][Full Text] [Related]  

  • 6. The Gut Microbiome of Pediatric Crohn's Disease Patients Differs from Healthy Controls in Genes That Can Influence the Balance Between a Healthy and Dysregulated Immune Response.
    Dunn KA; Moore-Connors J; MacIntyre B; Stadnyk A; Thomas NA; Noble A; Mahdi G; Rashid M; Otley AR; Bielawski JP; Van Limbergen J
    Inflamm Bowel Dis; 2016 Nov; 22(11):2607-2618. PubMed ID: 27760077
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Graph mining for next generation sequencing: leveraging the assembly graph for biological insights.
    Warnke-Sommer J; Ali H
    BMC Genomics; 2016 May; 17():340. PubMed ID: 27154001
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Fast and simple protein-alignment-guided assembly of orthologous gene families from microbiome sequencing reads.
    Huson DH; Tappu R; Bazinet AL; Xie C; Cummings MP; Nieselt K; Williams R
    Microbiome; 2017 Jan; 5(1):11. PubMed ID: 28122610
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Multi-omics differentially classify disease state and treatment outcome in pediatric Crohn's disease.
    Douglas GM; Hansen R; Jones CMA; Dunn KA; Comeau AM; Bielawski JP; Tayler R; El-Omar EM; Russell RK; Hold GL; Langille MGI; Van Limbergen J
    Microbiome; 2018 Jan; 6(1):13. PubMed ID: 29335008
    [TBL] [Abstract][Full Text] [Related]  

  • 10. A fast and robust protocol for metataxonomic analysis using RNAseq data.
    Cox JW; Ballweg RA; Taft DH; Velayutham P; Haslam DB; Porollo A
    Microbiome; 2017 Jan; 5(1):7. PubMed ID: 28103917
    [TBL] [Abstract][Full Text] [Related]  

  • 11. FCMM: A comparative metagenomic approach for functional characterization of multiple metagenome samples.
    Lee J; Lee HT; Hong WY; Jang E; Kim J
    J Microbiol Methods; 2015 Aug; 115():121-8. PubMed ID: 26027543
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Quantitative Assessment of Shotgun Metagenomics and 16S rDNA Amplicon Sequencing in the Study of Human Gut Microbiome.
    Laudadio I; Fulci V; Palone F; Stronati L; Cucchiara S; Carissimi C
    OMICS; 2018 Apr; 22(4):248-254. PubMed ID: 29652573
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Fingerprinting cities: differentiating subway microbiome functionality.
    Zhu C; Miller M; Lusskin N; Mahlich Y; Wang Y; Zeng Z; Bromberg Y
    Biol Direct; 2019 Oct; 14(1):19. PubMed ID: 31666099
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Methodologies for probing the metatranscriptome of grassland soil.
    Garoutte A; Cardenas E; Tiedje J; Howe A
    J Microbiol Methods; 2016 Dec; 131():122-129. PubMed ID: 27793585
    [TBL] [Abstract][Full Text] [Related]  

  • 15. From Gene Annotation to Function Prediction for Metagenomics.
    Sharifi F; Ye Y
    Methods Mol Biol; 2017; 1611():27-34. PubMed ID: 28451969
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Recent insights into the tick microbiome gained through next-generation sequencing.
    Greay TL; Gofton AW; Paparini A; Ryan UM; Oskam CL; Irwin PJ
    Parasit Vectors; 2018 Jan; 11(1):12. PubMed ID: 29301588
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Combining gene prediction methods to improve metagenomic gene annotation.
    Yok NG; Rosen GL
    BMC Bioinformatics; 2011 Jan; 12():20. PubMed ID: 21232129
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Exploiting topic modeling to boost metagenomic reads binning.
    Zhang R; Cheng Z; Guan J; Zhou S
    BMC Bioinformatics; 2015; 16 Suppl 5(Suppl 5):S2. PubMed ID: 25859745
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Genetic diversity of Escherichia coli in gut microbiota of patients with Crohn's disease discovered using metagenomic and genomic analyses.
    Tyakht AV; Manolov AI; Kanygina AV; Ischenko DS; Kovarsky BA; Popenko AS; Pavlenko AV; Elizarova AV; Rakitina DV; Baikova JP; Ladygina VG; Kostryukova ES; Karpova IY; Semashko TA; Larin AK; Grigoryeva TV; Sinyagina MN; Malanin SY; Shcherbakov PL; Kharitonova AY; Khalif IL; Shapina MV; Maev IV; Andreev DN; Belousova EA; Buzunova YM; Alexeev DG; Govorun VM
    BMC Genomics; 2018 Dec; 19(1):968. PubMed ID: 30587114
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Artificial functional difference between microbial communities caused by length difference of sequencing reads.
    Zhang Q; Doak TG; Ye Y
    Pac Symp Biocomput; 2012; ():259-70. PubMed ID: 22174281
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.