533 related articles for article (PubMed ID: 29196558)
1. Microfluidic isoform sequencing shows widespread splicing coordination in the human transcriptome.
Tilgner H; Jahanbani F; Gupta I; Collier P; Wei E; Rasmussen M; Snyder M
Genome Res; 2018 Feb; 28(2):231-242. PubMed ID: 29196558
[TBL] [Abstract][Full Text] [Related]
2. BRIE: transcriptome-wide splicing quantification in single cells.
Huang Y; Sanguinetti G
Genome Biol; 2017 Jun; 18(1):123. PubMed ID: 28655331
[TBL] [Abstract][Full Text] [Related]
3. Transcript Profiling Using Long-Read Sequencing Technologies.
Bayega A; Wang YC; Oikonomopoulos S; Djambazian H; Fahiminiya S; Ragoussis J
Methods Mol Biol; 2018; 1783():121-147. PubMed ID: 29767360
[TBL] [Abstract][Full Text] [Related]
4. Reconstruction of the full-length transcriptome atlas using PacBio Iso-Seq provides insight into the alternative splicing in Gossypium australe.
Feng S; Xu M; Liu F; Cui C; Zhou B
BMC Plant Biol; 2019 Aug; 19(1):365. PubMed ID: 31426739
[TBL] [Abstract][Full Text] [Related]
5. Comprehensive transcriptome analysis using synthetic long-read sequencing reveals molecular co-association of distant splicing events.
Tilgner H; Jahanbani F; Blauwkamp T; Moshrefi A; Jaeger E; Chen F; Harel I; Bustamante CD; Rasmussen M; Snyder MP
Nat Biotechnol; 2015 Jul; 33(7):736-42. PubMed ID: 25985263
[TBL] [Abstract][Full Text] [Related]
6. Full-length isoform concatenation sequencing to resolve cancer transcriptome complexity.
Wijeratne S; Gonzalez MEH; Roach K; Miller KE; Schieffer KM; Fitch JR; Leonard J; White P; Kelly BJ; Cottrell CE; Mardis ER; Wilson RK; Miller AR
BMC Genomics; 2024 Jan; 25(1):122. PubMed ID: 38287261
[TBL] [Abstract][Full Text] [Related]
7. Improving RNA-Seq expression estimation by modeling isoform- and exon-specific read sequencing rate.
Liu X; Shi X; Chen C; Zhang L
BMC Bioinformatics; 2015 Oct; 16():332. PubMed ID: 26475308
[TBL] [Abstract][Full Text] [Related]
8. Gene expression and splicing alterations analyzed by high throughput RNA sequencing of chronic lymphocytic leukemia specimens.
Liao W; Jordaan G; Nham P; Phan RT; Pelegrini M; Sharma S
BMC Cancer; 2015 Oct; 15():714. PubMed ID: 26474785
[TBL] [Abstract][Full Text] [Related]
9. Alternative Splicing Signatures in RNA-seq Data: Percent Spliced in (PSI).
Schafer S; Miao K; Benson CC; Heinig M; Cook SA; Hubner N
Curr Protoc Hum Genet; 2015 Oct; 87():11.16.1-11.16.14. PubMed ID: 26439713
[TBL] [Abstract][Full Text] [Related]
10. Global transcriptome analysis reveals extensive gene remodeling, alternative splicing and differential transcription profiles in non-seed vascular plant Selaginella moellendorffii.
Zhu Y; Chen L; Zhang C; Hao P; Jing X; Li X
BMC Genomics; 2017 Jan; 18(Suppl 1):1042. PubMed ID: 28198676
[TBL] [Abstract][Full Text] [Related]
11. PacBio single molecule long-read sequencing provides insight into the complexity and diversity of the Pinctada fucata martensii transcriptome.
Zhang H; Xu H; Liu H; Pan X; Xu M; Zhang G; He M
BMC Genomics; 2020 Jul; 21(1):481. PubMed ID: 32660426
[TBL] [Abstract][Full Text] [Related]
12. Dynamic nanopore long-read sequencing analysis of HIV-1 splicing events during the early steps of infection.
Nguyen Quang N; Goudey S; Ségéral E; Mohammad A; Lemoine S; Blugeon C; Versapuech M; Paillart JC; Berlioz-Torrent C; Emiliani S; Gallois-Montbrun S
Retrovirology; 2020 Aug; 17(1):25. PubMed ID: 32807178
[TBL] [Abstract][Full Text] [Related]
13. PacBio full-length cDNA sequencing integrated with RNA-seq reads drastically improves the discovery of splicing transcripts in rice.
Zhang G; Sun M; Wang J; Lei M; Li C; Zhao D; Huang J; Li W; Li S; Li J; Yang J; Luo Y; Hu S; Zhang B
Plant J; 2019 Jan; 97(2):296-305. PubMed ID: 30288819
[TBL] [Abstract][Full Text] [Related]
14. A global survey of the transcriptome of allopolyploid Brassica napus based on single-molecule long-read isoform sequencing and Illumina-based RNA sequencing data.
Yao S; Liang F; Gill RA; Huang J; Cheng X; Liu Y; Tong C; Liu S
Plant J; 2020 Jul; 103(2):843-857. PubMed ID: 32270540
[TBL] [Abstract][Full Text] [Related]
15. Freddie: annotation-independent detection and discovery of transcriptomic alternative splicing isoforms using long-read sequencing.
Orabi B; Xie N; McConeghy B; Dong X; Chauve C; Hach F
Nucleic Acids Res; 2023 Jan; 51(2):e11. PubMed ID: 36478271
[TBL] [Abstract][Full Text] [Related]
16. Transcript Identification Through Long-Read Sequencing.
Seki M; Oka M; Xu L; Suzuki A; Suzuki Y
Methods Mol Biol; 2021; 2284():531-541. PubMed ID: 33835462
[TBL] [Abstract][Full Text] [Related]
17. Isoform Evolution in Primates through Independent Combination of Alternative RNA Processing Events.
Zhang SJ; Wang C; Yan S; Fu A; Luan X; Li Y; Sunny Shen Q; Zhong X; Chen JY; Wang X; Chin-Ming Tan B; He A; Li CY
Mol Biol Evol; 2017 Oct; 34(10):2453-2468. PubMed ID: 28957512
[TBL] [Abstract][Full Text] [Related]
18. Tracking Alternatively Spliced Isoforms from Long Reads by SpliceHunter.
Kuang Z; Canzar S
Methods Mol Biol; 2018; 1751():73-88. PubMed ID: 29508290
[TBL] [Abstract][Full Text] [Related]
19. PacBio single-molecule long-read sequencing shed new light on the transcripts and splice isoforms of the perennial ryegrass.
Xie L; Teng K; Tan P; Chao Y; Li Y; Guo W; Han L
Mol Genet Genomics; 2020 Mar; 295(2):475-489. PubMed ID: 31894400
[TBL] [Abstract][Full Text] [Related]
20. Integrative analyses of RNA editing, alternative splicing, and expression of young genes in human brain transcriptome by deep RNA sequencing.
Wu DD; Ye LQ; Li Y; Sun YB; Shao Y; Chen C; Zhu Z; Zhong L; Wang L; Irwin DM; Zhang YE; Zhang YP
J Mol Cell Biol; 2015 Aug; 7(4):314-25. PubMed ID: 26186942
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
