These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
389 related articles for article (PubMed ID: 29199020)
1. The Library of Integrated Network-Based Cellular Signatures NIH Program: System-Level Cataloging of Human Cells Response to Perturbations. Keenan AB; Jenkins SL; Jagodnik KM; Koplev S; He E; Torre D; Wang Z; Dohlman AB; Silverstein MC; Lachmann A; Kuleshov MV; Ma'ayan A; Stathias V; Terryn R; Cooper D; Forlin M; Koleti A; Vidovic D; Chung C; Schürer SC; Vasiliauskas J; Pilarczyk M; Shamsaei B; Fazel M; Ren Y; Niu W; Clark NA; White S; Mahi N; Zhang L; Kouril M; Reichard JF; Sivaganesan S; Medvedovic M; Meller J; Koch RJ; Birtwistle MR; Iyengar R; Sobie EA; Azeloglu EU; Kaye J; Osterloh J; Haston K; Kalra J; Finkbiener S; Li J; Milani P; Adam M; Escalante-Chong R; Sachs K; Lenail A; Ramamoorthy D; Fraenkel E; Daigle G; Hussain U; Coye A; Rothstein J; Sareen D; Ornelas L; Banuelos M; Mandefro B; Ho R; Svendsen CN; Lim RG; Stocksdale J; Casale MS; Thompson TG; Wu J; Thompson LM; Dardov V; Venkatraman V; Matlock A; Van Eyk JE; Jaffe JD; Papanastasiou M; Subramanian A; Golub TR; Erickson SD; Fallahi-Sichani M; Hafner M; Gray NS; Lin JR; Mills CE; Muhlich JL; Niepel M; Shamu CE; Williams EH; Wrobel D; Sorger PK; Heiser LM; Gray JW; Korkola JE; Mills GB; LaBarge M; Feiler HS; Dane MA; Bucher E; Nederlof M; Sudar D; Gross S; Kilburn DF; Smith R; Devlin K; Margolis R; Derr L; Lee A; Pillai A Cell Syst; 2018 Jan; 6(1):13-24. PubMed ID: 29199020 [TBL] [Abstract][Full Text] [Related]
2. Data Portal for the Library of Integrated Network-based Cellular Signatures (LINCS) program: integrated access to diverse large-scale cellular perturbation response data. Koleti A; Terryn R; Stathias V; Chung C; Cooper DJ; Turner JP; Vidovic D; Forlin M; Kelley TT; D'Urso A; Allen BK; Torre D; Jagodnik KM; Wang L; Jenkins SL; Mader C; Niu W; Fazel M; Mahi N; Pilarczyk M; Clark N; Shamsaei B; Meller J; Vasiliauskas J; Reichard J; Medvedovic M; Ma'ayan A; Pillai A; Schürer SC Nucleic Acids Res; 2018 Jan; 46(D1):D558-D566. PubMed ID: 29140462 [TBL] [Abstract][Full Text] [Related]
3. Getting Started with LINCS Datasets and Tools. Xie Z; Kropiwnicki E; Wojciechowicz ML; Jagodnik KM; Shu I; Bailey A; Clarke DJB; Jeon M; Evangelista JE; V Kuleshov M; Lachmann A; Parigi AA; Sanchez JM; Jenkins SL; Ma'ayan A Curr Protoc; 2022 Jul; 2(7):e487. PubMed ID: 35876555 [TBL] [Abstract][Full Text] [Related]
4. Metadata Standard and Data Exchange Specifications to Describe, Model, and Integrate Complex and Diverse High-Throughput Screening Data from the Library of Integrated Network-based Cellular Signatures (LINCS). Vempati UD; Chung C; Mader C; Koleti A; Datar N; Vidović D; Wrobel D; Erickson S; Muhlich JL; Berriz G; Benes CH; Subramanian A; Pillai A; Shamu CE; Schürer SC J Biomol Screen; 2014 Jun; 19(5):803-16. PubMed ID: 24518066 [TBL] [Abstract][Full Text] [Related]
5. LINCS Data Portal 2.0: next generation access point for perturbation-response signatures. Stathias V; Turner J; Koleti A; Vidovic D; Cooper D; Fazel-Najafabadi M; Pilarczyk M; Terryn R; Chung C; Umeano A; Clarke DJB; Lachmann A; Evangelista JE; Ma'ayan A; Medvedovic M; Schürer SC Nucleic Acids Res; 2020 Jan; 48(D1):D431-D439. PubMed ID: 31701147 [TBL] [Abstract][Full Text] [Related]
6. Ontological representation, integration, and analysis of LINCS cell line cells and their cellular responses. Ong E; Xie J; Ni Z; Liu Q; Sarntivijai S; Lin Y; Cooper D; Terryn R; Stathias V; Chung C; Schürer S; He Y BMC Bioinformatics; 2017 Dec; 18(Suppl 17):556. PubMed ID: 29322930 [TBL] [Abstract][Full Text] [Related]
7. Compound signature detection on LINCS L1000 big data. Liu C; Su J; Yang F; Wei K; Ma J; Zhou X Mol Biosyst; 2015 Mar; 11(3):714-22. PubMed ID: 25609570 [TBL] [Abstract][Full Text] [Related]
8. Sustainable data and metadata management at the BD2K-LINCS Data Coordination and Integration Center. Stathias V; Koleti A; Vidović D; Cooper DJ; Jagodnik KM; Terryn R; Forlin M; Chung C; Torre D; Ayad N; Medvedovic M; Ma'ayan A; Pillai A; Schürer SC Sci Data; 2018 Jun; 5():180117. PubMed ID: 29917015 [TBL] [Abstract][Full Text] [Related]
9. Transcriptional Characterization of Compounds: Lessons Learned from the Public LINCS Data. De Wolf H; De Bondt A; Turner H; Göhlmann HW Assay Drug Dev Technol; 2016 May; 14(4):252-60. PubMed ID: 27187605 [TBL] [Abstract][Full Text] [Related]
10. A review of connectivity map and computational approaches in pharmacogenomics. Musa A; Ghoraie LS; Zhang SD; Glazko G; Yli-Harja O; Dehmer M; Haibe-Kains B; Emmert-Streib F Brief Bioinform; 2018 May; 19(3):506-523. PubMed ID: 28069634 [TBL] [Abstract][Full Text] [Related]
11. LINCS Canvas Browser: interactive web app to query, browse and interrogate LINCS L1000 gene expression signatures. Duan Q; Flynn C; Niepel M; Hafner M; Muhlich JL; Fernandez NF; Rouillard AD; Tan CM; Chen EY; Golub TR; Sorger PK; Subramanian A; Ma'ayan A Nucleic Acids Res; 2014 Jul; 42(Web Server issue):W449-60. PubMed ID: 24906883 [TBL] [Abstract][Full Text] [Related]
12. Large-scale integration of small molecule-induced genome-wide transcriptional responses, Kinome-wide binding affinities and cell-growth inhibition profiles reveal global trends characterizing systems-level drug action. Vidović D; Koleti A; Schürer SC Front Genet; 2014; 5():342. PubMed ID: 25324859 [TBL] [Abstract][Full Text] [Related]
13. Drug and disease signature integration identifies synergistic combinations in glioblastoma. Stathias V; Jermakowicz AM; Maloof ME; Forlin M; Walters W; Suter RK; Durante MA; Williams SL; Harbour JW; Volmar CH; Lyons NJ; Wahlestedt C; Graham RM; Ivan ME; Komotar RJ; Sarkaria JN; Subramanian A; Golub TR; Schürer SC; Ayad NG Nat Commun; 2018 Dec; 9(1):5315. PubMed ID: 30552330 [TBL] [Abstract][Full Text] [Related]
14. Systematic Quality Control Analysis of LINCS Data. Cheng L; Li L CPT Pharmacometrics Syst Pharmacol; 2016 Nov; 5(11):588-598. PubMed ID: 27796074 [TBL] [Abstract][Full Text] [Related]
15. Knowledge graph analytics platform with LINCS and IDG for Parkinson's disease target illumination. Yang JJ; Gessner CR; Duerksen JL; Biber D; Binder JL; Ozturk M; Foote B; McEntire R; Stirling K; Ding Y; Wild DJ BMC Bioinformatics; 2022 Jan; 23(1):37. PubMed ID: 35021991 [TBL] [Abstract][Full Text] [Related]
16. Systems Pharmacogenomic Landscape of Drug Similarities from LINCS data: Drug Association Networks. Musa A; Tripathi S; Dehmer M; Yli-Harja O; Kauffman SA; Emmert-Streib F Sci Rep; 2019 May; 9(1):7849. PubMed ID: 31127155 [TBL] [Abstract][Full Text] [Related]
17. Linking chemicals, genes and morphological perturbations to diseases. Cerisier N; Dafniet B; Badel A; Taboureau O Toxicol Appl Pharmacol; 2023 Feb; 461():116407. PubMed ID: 36736439 [TBL] [Abstract][Full Text] [Related]
18. Large-scale analysis of expression signatures reveals hidden links among diverse cellular processes. Ge SX BMC Syst Biol; 2011 May; 5():87. PubMed ID: 21619705 [TBL] [Abstract][Full Text] [Related]
19. SigCom LINCS: data and metadata search engine for a million gene expression signatures. Evangelista JE; Clarke DJB; Xie Z; Lachmann A; Jeon M; Chen K; Jagodnik KM; Jenkins SL; Kuleshov MV; Wojciechowicz ML; Schürer SC; Medvedovic M; Ma'ayan A Nucleic Acids Res; 2022 Jul; 50(W1):W697-W709. PubMed ID: 35524556 [TBL] [Abstract][Full Text] [Related]
20. Drug Signature Detection Based on L1000 Genomic and Proteomic Big Data. Chen W; Zhou X Methods Mol Biol; 2019; 1939():273-286. PubMed ID: 30848467 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]