348 related articles for article (PubMed ID: 29202200)
1. Alternative start and termination sites of transcription drive most transcript isoform differences across human tissues.
Reyes A; Huber W
Nucleic Acids Res; 2018 Jan; 46(2):582-592. PubMed ID: 29202200
[TBL] [Abstract][Full Text] [Related]
2. Histone modifications are associated with transcript isoform diversity in normal and cancer cells.
Podlaha O; De S; Gonen M; Michor F
PLoS Comput Biol; 2014 Jun; 10(6):e1003611. PubMed ID: 24901363
[TBL] [Abstract][Full Text] [Related]
3. Differential transcript isoform usage pre- and post-zygotic genome activation in zebrafish.
Aanes H; Østrup O; Andersen IS; Moen LF; Mathavan S; Collas P; Alestrom P
BMC Genomics; 2013 May; 14():331. PubMed ID: 23676078
[TBL] [Abstract][Full Text] [Related]
4. Sites of transcription initiation drive mRNA isoform selection.
Alfonso-Gonzalez C; Legnini I; Holec S; Arrigoni L; Ozbulut HC; Mateos F; Koppstein D; Rybak-Wolf A; Bönisch U; Rajewsky N; Hilgers V
Cell; 2023 May; 186(11):2438-2455.e22. PubMed ID: 37178687
[TBL] [Abstract][Full Text] [Related]
5. Multiple transcription initiation sites, alternative splicing, and differential polyadenylation contribute to the complexity of human neurofibromatosis 2 transcripts.
Chang LS; Akhmametyeva EM; Wu Y; Zhu L; Welling DB
Genomics; 2002 Jan; 79(1):63-76. PubMed ID: 11827459
[TBL] [Abstract][Full Text] [Related]
6. AltTrans: transcript pattern variants annotated for both alternative splicing and alternative polyadenylation.
Le Texier V; Riethoven JJ; Kumanduri V; Gopalakrishnan C; Lopez F; Gautheret D; Thanaraj TA
BMC Bioinformatics; 2006 Mar; 7():169. PubMed ID: 16556303
[TBL] [Abstract][Full Text] [Related]
7. PennDiff: detecting differential alternative splicing and transcription by RNA sequencing.
Hu Y; Lin J; Hu J; Hu G; Wang K; Zhang H; Reilly MP; Li M
Bioinformatics; 2018 Jul; 34(14):2384-2391. PubMed ID: 29474557
[TBL] [Abstract][Full Text] [Related]
8. Tumor-specific usage of alternative transcription start sites in colorectal cancer identified by genome-wide exon array analysis.
Thorsen K; Schepeler T; Øster B; Rasmussen MH; Vang S; Wang K; Hansen KQ; Lamy P; Pedersen JS; Eller A; Mansilla F; Laurila K; Wiuf C; Laurberg S; Dyrskjøt L; Ørntoft TF; Andersen CL
BMC Genomics; 2011 Oct; 12():505. PubMed ID: 21999571
[TBL] [Abstract][Full Text] [Related]
9. mountainClimber Identifies Alternative Transcription Start and Polyadenylation Sites in RNA-Seq.
Cass AA; Xiao X
Cell Syst; 2019 Oct; 9(4):393-400.e6. PubMed ID: 31542416
[TBL] [Abstract][Full Text] [Related]
10. Distinct proteins encoded by alternative transcripts of the PURG gene, located contrapodal to WRN on chromosome 8, determined by differential termination/polyadenylation.
Liu H; Johnson EM
Nucleic Acids Res; 2002 Jun; 30(11):2417-26. PubMed ID: 12034829
[TBL] [Abstract][Full Text] [Related]
11. A high-resolution single-molecule sequencing-based Arabidopsis transcriptome using novel methods of Iso-seq analysis.
Zhang R; Kuo R; Coulter M; Calixto CPG; Entizne JC; Guo W; Marquez Y; Milne L; Riegler S; Matsui A; Tanaka M; Harvey S; Gao Y; Wießner-Kroh T; Paniagua A; Crespi M; Denby K; Hur AB; Huq E; Jantsch M; Jarmolowski A; Koester T; Laubinger S; Li QQ; Gu L; Seki M; Staiger D; Sunkar R; Szweykowska-Kulinska Z; Tu SL; Wachter A; Waugh R; Xiong L; Zhang XN; Conesa A; Reddy ASN; Barta A; Kalyna M; Brown JWS
Genome Biol; 2022 Jul; 23(1):149. PubMed ID: 35799267
[TBL] [Abstract][Full Text] [Related]
12. Cloning and characterization of buffalo NANOG gene: alternative transcription start sites, splicing, and polyadenylation in embryonic stem cell-like cells.
Singh N; Sharma R; George A; Singla SK; Palta P; Manik R; Chauhan MS; Singh D
DNA Cell Biol; 2012 May; 31(5):721-31. PubMed ID: 22011250
[TBL] [Abstract][Full Text] [Related]
13. Single-cell RNA cap and tail sequencing (scRCAT-seq) reveals subtype-specific isoforms differing in transcript demarcation.
Hu Y; Zhong J; Xiao Y; Xing Z; Sheu K; Fan S; An Q; Qiu Y; Zheng Y; Liu X; Fan G; Liu Y
Nat Commun; 2020 Oct; 11(1):5148. PubMed ID: 33051455
[TBL] [Abstract][Full Text] [Related]
14. Impact of alternative initiation, splicing, and termination on the diversity of the mRNA transcripts encoded by the mouse transcriptome.
Zavolan M; Kondo S; Schonbach C; Adachi J; Hume DA; Hayashizaki Y; Gaasterland T; ;
Genome Res; 2003 Jun; 13(6B):1290-300. PubMed ID: 12819126
[TBL] [Abstract][Full Text] [Related]
15. 5' diversity of human hepatic PXR (NR1I2) transcripts and identification of the major transcription initiation site.
Kurose K; Koyano S; Ikeda S; Tohkin M; Hasegawa R; Sawada J
Mol Cell Biochem; 2005 May; 273(1-2):79-85. PubMed ID: 16013442
[TBL] [Abstract][Full Text] [Related]
16. Pairwise comparisons of ten porcine tissues identify differential transcriptional regulation at the gene, isoform, promoter and transcription start site level.
Farajzadeh L; Hornshøj H; Momeni J; Thomsen B; Larsen K; Hedegaard J; Bendixen C; Madsen LB
Biochem Biophys Res Commun; 2013 Aug; 438(2):346-52. PubMed ID: 23896602
[TBL] [Abstract][Full Text] [Related]
17. Regulatory mechanisms for 3'-end alternative splicing and polyadenylation of the Glial Fibrillary Acidic Protein, GFAP, transcript.
Blechingberg J; Lykke-Andersen S; Jensen TH; Jørgensen AL; Nielsen AL
Nucleic Acids Res; 2007; 35(22):7636-50. PubMed ID: 17981838
[TBL] [Abstract][Full Text] [Related]
18. Genome-wide characterization of differential transcript usage in Arabidopsis thaliana.
Vaneechoutte D; Estrada AR; Lin YC; Loraine AE; Vandepoele K
Plant J; 2017 Dec; 92(6):1218-1231. PubMed ID: 29031026
[TBL] [Abstract][Full Text] [Related]
19. Expression of murine muscle-enriched A-type lamin-interacting protein (MLIP) is regulated by tissue-specific alternative transcription start sites.
Cattin ME; Deeke SA; Dick SA; Verret-Borsos ZJA; Tennakoon G; Gupta R; Mak E; Roeske CL; Weldrick JJ; Megeney LA; Burgon PG
J Biol Chem; 2018 Dec; 293(51):19761-19770. PubMed ID: 30389785
[TBL] [Abstract][Full Text] [Related]
20. Genomic organization and alternative transcripts of the human Connexin40 gene.
Dupays L; Mazurais D; Rücker-Martin C; Calmels T; Bernot D; Cronier L; Malassiné A; Gros D; Théveniau-Ruissy M
Gene; 2003 Feb; 305(1):79-90. PubMed ID: 12594044
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
