196 related articles for article (PubMed ID: 29220511)
1. Unbiased Estimate of Synonymous and Nonsynonymous Substitution Rates with Nonstationary Base Composition.
Guéguen L; Duret L
Mol Biol Evol; 2018 Mar; 35(3):734-742. PubMed ID: 29220511
[TBL] [Abstract][Full Text] [Related]
2. Improved inference of site-specific positive selection under a generalized parametric codon model when there are multinucleotide mutations and multiple nonsynonymous rates.
Dunn KA; Kenney T; Gu H; Bielawski JP
BMC Evol Biol; 2019 Jan; 19(1):22. PubMed ID: 30642241
[TBL] [Abstract][Full Text] [Related]
3. Why time matters: codon evolution and the temporal dynamics of dN/dS.
Mugal CF; Wolf JB; Kaj I
Mol Biol Evol; 2014 Jan; 31(1):212-31. PubMed ID: 24129904
[TBL] [Abstract][Full Text] [Related]
4. Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models.
Yang Z; Nielsen R
Mol Biol Evol; 2000 Jan; 17(1):32-43. PubMed ID: 10666704
[TBL] [Abstract][Full Text] [Related]
5. Likelihood ratio tests for detecting positive selection and application to primate lysozyme evolution.
Yang Z
Mol Biol Evol; 1998 May; 15(5):568-73. PubMed ID: 9580986
[TBL] [Abstract][Full Text] [Related]
6. Low rates of synonymous mutations in sequences of Mycobacterium tuberculosis GyrA and KatG genes.
Khrustalev VV; Arjomandzadegan M; Barkovsky EV; Titov LP
Tuberculosis (Edinb); 2012 Jul; 92(4):333-44. PubMed ID: 22521568
[TBL] [Abstract][Full Text] [Related]
7. Standard Codon Substitution Models Overestimate Purifying Selection for Nonstationary Data.
Kaehler BD; Yap VB; Huttley GA
Genome Biol Evol; 2017 Jan; 9(1):134-149. PubMed ID: 28175284
[TBL] [Abstract][Full Text] [Related]
8. Spatial covariation of mutation and nonsynonymous substitution rates in vertebrate mitochondrial genomes.
Broughton RE; Reneau PC
Mol Biol Evol; 2006 Aug; 23(8):1516-24. PubMed ID: 16705079
[TBL] [Abstract][Full Text] [Related]
9. A counting renaissance: combining stochastic mapping and empirical Bayes to quickly detect amino acid sites under positive selection.
Lemey P; Minin VN; Bielejec F; Kosakovsky Pond SL; Suchard MA
Bioinformatics; 2012 Dec; 28(24):3248-56. PubMed ID: 23064000
[TBL] [Abstract][Full Text] [Related]
10. The influence of selection for protein stability on dN/dS estimations.
Dasmeh P; Serohijos AW; Kepp KP; Shakhnovich EI
Genome Biol Evol; 2014 Oct; 6(10):2956-67. PubMed ID: 25355808
[TBL] [Abstract][Full Text] [Related]
11. Uncorrected nucleotide bias in mtDNA can mimic the effects of positive Darwinian selection.
Albu M; Min XJ; Hickey D; Golding B
Mol Biol Evol; 2008 Dec; 25(12):2521-4. PubMed ID: 18842686
[TBL] [Abstract][Full Text] [Related]
12. Molecular evolution of nuclear genes in Cupressacea, a group of conifer trees.
Kusumi J; Tsumura Y; Yoshimaru H; Tachida H
Mol Biol Evol; 2002 May; 19(5):736-47. PubMed ID: 11961107
[TBL] [Abstract][Full Text] [Related]
13. Analysis of selection in protein-coding sequences accounting for common biases.
Del Amparo R; Branco C; Arenas J; Vicens A; Arenas M
Brief Bioinform; 2021 Sep; 22(5):. PubMed ID: 33479739
[TBL] [Abstract][Full Text] [Related]
14. Polymorphism Data Assist Estimation of the Nonsynonymous over Synonymous Fixation Rate Ratio ω for Closely Related Species.
Mugal CF; Kutschera VE; Botero-Castro F; Wolf JBW; Kaj I
Mol Biol Evol; 2020 Jan; 37(1):260-279. PubMed ID: 31504782
[TBL] [Abstract][Full Text] [Related]
15. Codon Usage Selection Can Bias Estimation of the Fraction of Adaptive Amino Acid Fixations.
Matsumoto T; John A; Baeza-Centurion P; Li B; Akashi H
Mol Biol Evol; 2016 Jun; 33(6):1580-9. PubMed ID: 26873577
[TBL] [Abstract][Full Text] [Related]
16. Comparative study: nonsynonymous and synonymous substitution of SARS-CoV-2, SARS-CoV, and MERS-CoV genome.
Sohpal VK
Genomics Inform; 2021 Jun; 19(2):e15. PubMed ID: 34261300
[TBL] [Abstract][Full Text] [Related]
17. Weak selection on synonymous codons substantially inflates
Rahman S; Kosakovsky Pond SL; Webb A; Hey J
Proc Natl Acad Sci U S A; 2021 May; 118(20):. PubMed ID: 33972434
[TBL] [Abstract][Full Text] [Related]
18. Synonymous and nonsynonymous rate variation in nuclear genes of mammals.
Yang Z; Nielsen R
J Mol Evol; 1998 Apr; 46(4):409-18. PubMed ID: 9541535
[TBL] [Abstract][Full Text] [Related]
19. Mutational Signatures Are Critical for Proper Estimation of Purifying Selection Pressures in Cancer Somatic Mutation Data When Using the dN/dS Metric.
Van den Eynden J; Larsson E
Front Genet; 2017; 8():74. PubMed ID: 28642787
[TBL] [Abstract][Full Text] [Related]
20. The positive correlation between dN/dS and dS in mammals is due to runs of adjacent substitutions.
Stoletzki N; Eyre-Walker A
Mol Biol Evol; 2011 Apr; 28(4):1371-80. PubMed ID: 21115654
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
