These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
3. Accurate Protein-Folding Transition-Path Statistics from a Simple Free-Energy Landscape. Jacobs WM; Shakhnovich EI J Phys Chem B; 2018 Dec; 122(49):11126-11136. PubMed ID: 30091592 [TBL] [Abstract][Full Text] [Related]
4. Transition path times reveal memory effects and anomalous diffusion in the dynamics of protein folding. Satija R; Das A; Makarov DE J Chem Phys; 2017 Oct; 147(15):152707. PubMed ID: 29055292 [TBL] [Abstract][Full Text] [Related]
5. Direct observation of transition paths during the folding of proteins and nucleic acids. Neupane K; Foster DA; Dee DR; Yu H; Wang F; Woodside MT Science; 2016 Apr; 352(6282):239-42. PubMed ID: 27124461 [TBL] [Abstract][Full Text] [Related]
6. Transition paths, diffusive processes, and preequilibria of protein folding. Zhang Z; Chan HS Proc Natl Acad Sci U S A; 2012 Dec; 109(51):20919-24. PubMed ID: 23213246 [TBL] [Abstract][Full Text] [Related]
7. Thermodynamics of force-dependent folding and unfolding of small protein and nucleic acid structures. Yao M; Chen H; Yan J Integr Biol (Camb); 2015 Oct; 7(10):1154-60. PubMed ID: 25799983 [TBL] [Abstract][Full Text] [Related]
8. Diffusive model of protein folding dynamics with Kramers turnover in rate. Best RB; Hummer G Phys Rev Lett; 2006 Jun; 96(22):228104. PubMed ID: 16803349 [TBL] [Abstract][Full Text] [Related]
9. Protein Folding Dynamics as Diffusion on a Free Energy Surface: Rate Equation Terms, Transition Paths, and Analysis of Single-Molecule Photon Trajectories. Mothi N; Muñoz V J Phys Chem B; 2021 Nov; 125(45):12413-12425. PubMed ID: 34735144 [TBL] [Abstract][Full Text] [Related]
10. Quantifying kinetic paths of protein folding. Wang J; Zhang K; Lu H; Wang E Biophys J; 2005 Sep; 89(3):1612-20. PubMed ID: 15994895 [TBL] [Abstract][Full Text] [Related]
12. Single-molecule fluorescence experiments determine protein folding transition path times. Chung HS; McHale K; Louis JM; Eaton WA Science; 2012 Feb; 335(6071):981-4. PubMed ID: 22363011 [TBL] [Abstract][Full Text] [Related]
13. Direct measurement of sequence-dependent transition path times and conformational diffusion in DNA duplex formation. Neupane K; Wang F; Woodside MT Proc Natl Acad Sci U S A; 2017 Feb; 114(6):1329-1334. PubMed ID: 28115714 [TBL] [Abstract][Full Text] [Related]
14. Reconstructing folding energy landscapes from splitting probability analysis of single-molecule trajectories. Manuel AP; Lambert J; Woodside MT Proc Natl Acad Sci U S A; 2015 Jun; 112(23):7183-8. PubMed ID: 26039984 [TBL] [Abstract][Full Text] [Related]
15. Dominant kinetic paths on biomolecular binding-folding energy landscape. Wang J; Zhang K; Lu H; Wang E Phys Rev Lett; 2006 Apr; 96(16):168101. PubMed ID: 16712278 [TBL] [Abstract][Full Text] [Related]
16. Protein folding transition path times from single molecule FRET. Chung HS; Eaton WA Curr Opin Struct Biol; 2018 Feb; 48():30-39. PubMed ID: 29080467 [TBL] [Abstract][Full Text] [Related]
17. Accurate free energy calculation along optimized paths. Chen C; Xiao Y J Comput Chem; 2010 May; 31(7):1368-75. PubMed ID: 19859916 [TBL] [Abstract][Full Text] [Related]
19. Broad distributions of transition-path times are fingerprints of multidimensionality of the underlying free energy landscapes. Satija R; Berezhkovskii AM; Makarov DE Proc Natl Acad Sci U S A; 2020 Nov; 117(44):27116-27123. PubMed ID: 33087575 [TBL] [Abstract][Full Text] [Related]
20. Microscopic origin of diffusive dynamics in the context of transition path time distributions for protein folding and unfolding. Dutta R; Pollak E Phys Chem Chem Phys; 2022 Oct; 24(41):25373-25382. PubMed ID: 36239220 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]