These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

496 related articles for article (PubMed ID: 29229983)

  • 1. Annotation-free quantification of RNA splicing using LeafCutter.
    Li YI; Knowles DA; Humphrey J; Barbeira AN; Dickinson SP; Im HK; Pritchard JK
    Nat Genet; 2018 Jan; 50(1):151-158. PubMed ID: 29229983
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Genome variants associated with RNA splicing variations in bovine are extensively shared between tissues.
    Xiang R; Hayes BJ; Vander Jagt CJ; MacLeod IM; Khansefid M; Bowman PJ; Yuan Z; Prowse-Wilkins CP; Reich CM; Mason BA; Garner JB; Marett LC; Chen Y; Bolormaa S; Daetwyler HD; Chamberlain AJ; Goddard ME
    BMC Genomics; 2018 Jul; 19(1):521. PubMed ID: 29973141
    [TBL] [Abstract][Full Text] [Related]  

  • 3. RNA-Seq Analysis of Differential Splice Junction Usage and Intron Retentions by DEXSeq.
    Li Y; Rao X; Mattox WW; Amos CI; Liu B
    PLoS One; 2015; 10(9):e0136653. PubMed ID: 26327458
    [TBL] [Abstract][Full Text] [Related]  

  • 4. DiffSplice: the genome-wide detection of differential splicing events with RNA-seq.
    Hu Y; Huang Y; Du Y; Orellana CF; Singh D; Johnson AR; Monroy A; Kuan PF; Hammond SM; Makowski L; Randell SH; Chiang DY; Hayes DN; Jones C; Liu Y; Prins JF; Liu J
    Nucleic Acids Res; 2013 Jan; 41(2):e39. PubMed ID: 23155066
    [TBL] [Abstract][Full Text] [Related]  

  • 5. AS-Quant: Detection and Visualization of Alternative Splicing Events with RNA-seq Data.
    Fahmi NA; Nassereddeen H; Chang J; Park M; Yeh H; Sun J; Fan D; Yong J; Zhang W
    Int J Mol Sci; 2021 Apr; 22(9):. PubMed ID: 33922891
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Discover hidden splicing variations by mapping personal transcriptomes to personal genomes.
    Stein S; Lu ZX; Bahrami-Samani E; Park JW; Xing Y
    Nucleic Acids Res; 2015 Dec; 43(22):10612-22. PubMed ID: 26578562
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Evaluating the Contribution of Cell Type-Specific Alternative Splicing to Variation in Lipid Levels.
    Gawronski KAB; Bone WP; Park Y; Pashos EE; Wenz BM; Dudek MF; Wang X; Yang W; Rader DJ; Musunuru K; Voight BF; Brown CD
    Circ Genom Precis Med; 2023 Jun; 16(3):248-257. PubMed ID: 37165871
    [TBL] [Abstract][Full Text] [Related]  

  • 8. A mutation in a splicing factor that causes retinitis pigmentosa has a transcriptome-wide effect on mRNA splicing.
    Korir PK; Roberts L; Ramesar R; Seoighe C
    BMC Res Notes; 2014 Jun; 7():401. PubMed ID: 24969741
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Identification and analysis of splicing quantitative trait loci across multiple tissues in the human genome.
    Garrido-Martín D; Borsari B; Calvo M; Reverter F; Guigó R
    Nat Commun; 2021 Feb; 12(1):727. PubMed ID: 33526779
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Comparisons of computational methods for differential alternative splicing detection using RNA-seq in plant systems.
    Liu R; Loraine AE; Dickerson JA
    BMC Bioinformatics; 2014 Dec; 15(1):364. PubMed ID: 25511303
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Subcutaneous adipose tissue splice quantitative trait loci reveal differences in isoform usage associated with cardiometabolic traits.
    Brotman SM; Raulerson CK; Vadlamudi S; Currin KW; Shen Q; Parsons VA; Iyengar AK; Roman TS; Furey TS; Kuusisto J; Collins FS; Boehnke M; Laakso M; Pajukanta P; Mohlke KL
    Am J Hum Genet; 2022 Jan; 109(1):66-80. PubMed ID: 34995504
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Alternative Splicing Signatures in RNA-seq Data: Percent Spliced in (PSI).
    Schafer S; Miao K; Benson CC; Heinig M; Cook SA; Hubner N
    Curr Protoc Hum Genet; 2015 Oct; 87():11.16.1-11.16.14. PubMed ID: 26439713
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Alternative Splicing QTLs in European and African Populations.
    Ongen H; Dermitzakis ET
    Am J Hum Genet; 2015 Oct; 97(4):567-75. PubMed ID: 26430802
    [TBL] [Abstract][Full Text] [Related]  

  • 14. rMATS-turbo: an efficient and flexible computational tool for alternative splicing analysis of large-scale RNA-seq data.
    Wang Y; Xie Z; Kutschera E; Adams JI; Kadash-Edmondson KE; Xing Y
    Nat Protoc; 2024 Apr; 19(4):1083-1104. PubMed ID: 38396040
    [TBL] [Abstract][Full Text] [Related]  

  • 15. RNA-seq analysis of the C. briggsae transcriptome.
    Uyar B; Chu JS; Vergara IA; Chua SY; Jones MR; Wong T; Baillie DL; Chen N
    Genome Res; 2012 Aug; 22(8):1567-80. PubMed ID: 22772596
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Integrative splicing-quantitative-trait-locus analysis reveals risk loci for non-small-cell lung cancer.
    Wang Y; Ding Y; Liu S; Wang C; Zhang E; Chen C; Zhu M; Zhang J; Zhu C; Ji M; Dai J; Jin G; Hu Z; Shen H; Ma H
    Am J Hum Genet; 2023 Sep; 110(9):1574-1589. PubMed ID: 37562399
    [TBL] [Abstract][Full Text] [Related]  

  • 17. GLiMMPS: robust statistical model for regulatory variation of alternative splicing using RNA-seq data.
    Zhao K; Lu ZX; Park JW; Zhou Q; Xing Y
    Genome Biol; 2013 Jul; 14(7):R74. PubMed ID: 23876401
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Identification of common genetic variants controlling transcript isoform variation in human whole blood.
    Zhang X; Joehanes R; Chen BH; Huan T; Ying S; Munson PJ; Johnson AD; Levy D; O'Donnell CJ
    Nat Genet; 2015 Apr; 47(4):345-52. PubMed ID: 25685889
    [TBL] [Abstract][Full Text] [Related]  

  • 19. SplicingTypesAnno: annotating and quantifying alternative splicing events for RNA-Seq data.
    Sun X; Zuo F; Ru Y; Guo J; Yan X; Sablok G
    Comput Methods Programs Biomed; 2015 Apr; 119(1):53-62. PubMed ID: 25720307
    [TBL] [Abstract][Full Text] [Related]  

  • 20. spliceR: an R package for classification of alternative splicing and prediction of coding potential from RNA-seq data.
    Vitting-Seerup K; Porse BT; Sandelin A; Waage J
    BMC Bioinformatics; 2014 Mar; 15():81. PubMed ID: 24655717
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 25.