415 related articles for article (PubMed ID: 29236251)
1. PAR-CLIP for Discovering Target Sites of RNA-Binding Proteins.
Garzia A; Morozov P; Sajek M; Meyer C; Tuschl T
Methods Mol Biol; 2018; 1720():55-75. PubMed ID: 29236251
[TBL] [Abstract][Full Text] [Related]
2. PAR-CLIP and streamlined small RNA cDNA library preparation protocol for the identification of RNA binding protein target sites.
Benhalevy D; McFarland HL; Sarshad AA; Hafner M
Methods; 2017 Apr; 118-119():41-49. PubMed ID: 27871973
[TBL] [Abstract][Full Text] [Related]
3. Cross-linking and immunoprecipitation of nuclear RNA-binding proteins.
Li Q; Uemura Y; Kawahara Y
Methods Mol Biol; 2015; 1262():247-63. PubMed ID: 25555586
[TBL] [Abstract][Full Text] [Related]
4. Transcriptome-wide Identification of RNA-binding Protein Binding Sites Using Photoactivatable-Ribonucleoside-Enhanced Crosslinking Immunoprecipitation (PAR-CLIP).
Maatz H; Kolinski M; Hubner N; Landthaler M
Curr Protoc Mol Biol; 2017 Apr; 118():27.6.1-27.6.19. PubMed ID: 28369676
[TBL] [Abstract][Full Text] [Related]
5. Optimization of PAR-CLIP for transcriptome-wide identification of binding sites of RNA-binding proteins.
Garzia A; Meyer C; Morozov P; Sajek M; Tuschl T
Methods; 2017 Apr; 118-119():24-40. PubMed ID: 27765618
[TBL] [Abstract][Full Text] [Related]
6. PAR-CLIP: A Method for Transcriptome-Wide Identification of RNA Binding Protein Interaction Sites.
Danan C; Manickavel S; Hafner M
Methods Mol Biol; 2016; 1358():153-73. PubMed ID: 26463383
[TBL] [Abstract][Full Text] [Related]
7. PAR-CliP--a method to identify transcriptome-wide the binding sites of RNA binding proteins.
Hafner M; Landthaler M; Burger L; Khorshid M; Hausser J; Berninger P; Rothballer A; Ascano M; Jungkamp AC; Munschauer M; Ulrich A; Wardle GS; Dewell S; Zavolan M; Tuschl T
J Vis Exp; 2010 Jul; (41):. PubMed ID: 20644507
[TBL] [Abstract][Full Text] [Related]
8. PAR-CLIP: A Method for Transcriptome-Wide Identification of RNA Binding Protein Interaction Sites.
Danan C; Manickavel S; Hafner M
Methods Mol Biol; 2022; 2404():167-188. PubMed ID: 34694609
[TBL] [Abstract][Full Text] [Related]
9. Transcriptome-wide identification of in vivo interactions between RNAs and RNA-binding proteins by RIP and PAR-CLIP assays.
González-Buendía E; Saldaña-Meyer R; Meier K; Recillas-Targa F
Methods Mol Biol; 2015; 1288():413-28. PubMed ID: 25827894
[TBL] [Abstract][Full Text] [Related]
10. Computational Analysis of RNA-Protein Interactions via Deep Sequencing.
Li L; Förstner KU; Chao Y
Methods Mol Biol; 2018; 1751():171-182. PubMed ID: 29508297
[TBL] [Abstract][Full Text] [Related]
11. omniCLIP: probabilistic identification of protein-RNA interactions from CLIP-seq data.
Drewe-Boss P; Wessels HH; Ohler U
Genome Biol; 2018 Nov; 19(1):183. PubMed ID: 30384847
[TBL] [Abstract][Full Text] [Related]
12. A combined sequence and structure based method for discovering enriched motifs in RNA from in vivo binding data.
Polishchuk M; Paz I; Kohen R; Mesika R; Yakhini Z; Mandel-Gutfreund Y
Methods; 2017 Apr; 118-119():73-81. PubMed ID: 28274760
[TBL] [Abstract][Full Text] [Related]
13. Sensitive and highly resolved identification of RNA-protein interaction sites in PAR-CLIP data.
Comoglio F; Sievers C; Paro R
BMC Bioinformatics; 2015 Feb; 16():32. PubMed ID: 25638391
[TBL] [Abstract][Full Text] [Related]
14. RNA interactome capture in yeast.
Beckmann BM
Methods; 2017 Apr; 118-119():82-92. PubMed ID: 27993706
[TBL] [Abstract][Full Text] [Related]
15. Optimized infrared photoactivatable ribonucleoside-enhanced crosslinking and immunoprecipitation (IR-PAR-CLIP) protocol identifies novel IGF2BP3-interacting RNAs in colon cancer cells.
Anisimova AS; Karagöz GE
RNA; 2023 Nov; 29(11):1818-1836. PubMed ID: 37582618
[TBL] [Abstract][Full Text] [Related]
16. Computational analysis of CLIP-seq data.
Uhl M; Houwaart T; Corrado G; Wright PR; Backofen R
Methods; 2017 Apr; 118-119():60-72. PubMed ID: 28254606
[TBL] [Abstract][Full Text] [Related]
17. Transcriptome-wide analysis of protein-RNA interactions using high-throughput sequencing.
Milek M; Wyler E; Landthaler M
Semin Cell Dev Biol; 2012 Apr; 23(2):206-12. PubMed ID: 22212136
[TBL] [Abstract][Full Text] [Related]
18. PIPE-CLIP: a comprehensive online tool for CLIP-seq data analysis.
Chen B; Yun J; Kim MS; Mendell JT; Xie Y
Genome Biol; 2014 Jan; 15(1):R18. PubMed ID: 24451213
[TBL] [Abstract][Full Text] [Related]
19. A Pipeline for PAR-CLIP Data Analysis.
Jens M
Methods Mol Biol; 2016; 1358():197-207. PubMed ID: 26463385
[TBL] [Abstract][Full Text] [Related]
20. SpyCLIP: an easy-to-use and high-throughput compatible CLIP platform for the characterization of protein-RNA interactions with high accuracy.
Zhao Y; Zhang Y; Teng Y; Liu K; Liu Y; Li W; Wu L
Nucleic Acids Res; 2019 Apr; 47(6):e33. PubMed ID: 30715466
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]