These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

151 related articles for article (PubMed ID: 29267855)

  • 1. BS-virus-finder: virus integration calling using bisulfite sequencing data.
    Gao S; Hu X; Xu F; Gao C; Xiong K; Zhao X; Chen H; Zhao S; Wang M; Fu D; Zhao X; Bai J; Mao L; Li B; Wu S; Wang J; Li S; Yang H; Bolund L; Pedersen CNS
    Gigascience; 2018 Jan; 7(1):1-7. PubMed ID: 29267855
    [TBL] [Abstract][Full Text] [Related]  

  • 2. MethGo: a comprehensive tool for analyzing whole-genome bisulfite sequencing data.
    Liao WW; Yen MR; Ju E; Hsu FM; Lam L; Chen PY
    BMC Genomics; 2015; 16 Suppl 12(Suppl 12):S11. PubMed ID: 26680022
    [TBL] [Abstract][Full Text] [Related]  

  • 3. BS-SNPer: SNP calling in bisulfite-seq data.
    Gao S; Zou D; Mao L; Liu H; Song P; Chen Y; Zhao S; Gao C; Li X; Gao Z; Fang X; Yang H; Ørntoft TF; Sørensen KD; Bolund L
    Bioinformatics; 2015 Dec; 31(24):4006-8. PubMed ID: 26319221
    [TBL] [Abstract][Full Text] [Related]  

  • 4. DNA methylation at hepatitis B viral integrants is associated with methylation at flanking human genomic sequences.
    Watanabe Y; Yamamoto H; Oikawa R; Toyota M; Yamamoto M; Kokudo N; Tanaka S; Arii S; Yotsuyanagi H; Koike K; Itoh F
    Genome Res; 2015 Mar; 25(3):328-37. PubMed ID: 25653310
    [TBL] [Abstract][Full Text] [Related]  

  • 5. epiGBS: reference-free reduced representation bisulfite sequencing.
    van Gurp TP; Wagemaker NC; Wouters B; Vergeer P; Ouborg JN; Verhoeven KJ
    Nat Methods; 2016 Apr; 13(4):322-4. PubMed ID: 26855363
    [TBL] [Abstract][Full Text] [Related]  

  • 6. BS-Seeker3: ultrafast pipeline for bisulfite sequencing.
    Huang KYY; Huang YJ; Chen PY
    BMC Bioinformatics; 2018 Apr; 19(1):111. PubMed ID: 29614954
    [TBL] [Abstract][Full Text] [Related]  

  • 7. BSPAT: a fast online tool for DNA methylation co-occurrence pattern analysis based on high-throughput bisulfite sequencing data.
    Hu K; Ting AH; Li J
    BMC Bioinformatics; 2015 Jul; 16():220. PubMed ID: 26163275
    [TBL] [Abstract][Full Text] [Related]  

  • 8. bsgenova: an accurate, robust, and fast genotype caller for bisulfite-sequencing data.
    Feng Y; Gao F
    BMC Bioinformatics; 2024 Jun; 25(1):206. PubMed ID: 38840038
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Whole-Genome Bisulfite Sequencing for the Methylation Analysis of Insect Genomes.
    Gatzmann F; Lyko F
    Methods Mol Biol; 2019; 1858():141-156. PubMed ID: 30414116
    [TBL] [Abstract][Full Text] [Related]  

  • 10. BS-Seeker2: a versatile aligning pipeline for bisulfite sequencing data.
    Guo W; Fiziev P; Yan W; Cokus S; Sun X; Zhang MQ; Chen PY; Pellegrini M
    BMC Genomics; 2013 Nov; 14():774. PubMed ID: 24206606
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Profiling DNA Methylation Using Bisulfite Sequencing (BS-Seq).
    Chen YR; Yu S; Zhong S
    Methods Mol Biol; 2018; 1675():31-43. PubMed ID: 29052183
    [TBL] [Abstract][Full Text] [Related]  

  • 12. pWGBSSimla: a profile-based whole-genome bisulfite sequencing data simulator incorporating methylation QTLs, allele-specific methylations and differentially methylated regions.
    Chung RH; Kang CY
    Bioinformatics; 2020 Feb; 36(3):660-665. PubMed ID: 31397839
    [TBL] [Abstract][Full Text] [Related]  

  • 13. An integrated package for bisulfite DNA methylation data analysis with Indel-sensitive mapping.
    Zhou Q; Lim JQ; Sung WK; Li G
    BMC Bioinformatics; 2019 Jan; 20(1):47. PubMed ID: 30669962
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Whole-Genome Bisulfite Sequencing for the Analysis of Genome-Wide DNA Methylation and Hydroxymethylation Patterns at Single-Nucleotide Resolution.
    Kernaleguen M; Daviaud C; Shen Y; Bonnet E; Renault V; Deleuze JF; Mauger F; Tost J
    Methods Mol Biol; 2018; 1767():311-349. PubMed ID: 29524144
    [TBL] [Abstract][Full Text] [Related]  

  • 15. MethylStar: A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing data.
    Shahryary Y; Hazarika RR; Johannes F
    BMC Genomics; 2020 Jul; 21(1):479. PubMed ID: 32660416
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Bisulfite Conversion of DNA: Performance Comparison of Different Kits and Methylation Quantitation of Epigenetic Biomarkers that Have the Potential to Be Used in Non-Invasive Prenatal Testing.
    Leontiou CA; Hadjidaniel MD; Mina P; Antoniou P; Ioannides M; Patsalis PC
    PLoS One; 2015; 10(8):e0135058. PubMed ID: 26247357
    [TBL] [Abstract][Full Text] [Related]  

  • 17. BS-RNA: An efficient mapping and annotation tool for RNA bisulfite sequencing data.
    Liang F; Hao L; Wang J; Shi S; Xiao J; Li R
    Comput Biol Chem; 2016 Dec; 65():173-177. PubMed ID: 27647160
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Genome-Wide Analysis of DNA Methylation in Hematopoietic Cells: DNA Methylation Analysis by WGBS.
    Jeong M; Guzman AG; Goodell MA
    Methods Mol Biol; 2017; 1633():137-149. PubMed ID: 28735485
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Detection of DNA Methylation by Whole-Genome Bisulfite Sequencing.
    Li Q; Hermanson PJ; Springer NM
    Methods Mol Biol; 2018; 1676():185-196. PubMed ID: 28986911
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Bioinformatic Analysis of Methylation Patterns Using Bisulfite Sequencing Data.
    Asselman J
    Methods Mol Biol; 2019; 1858():157-175. PubMed ID: 30414117
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.