BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

351 related articles for article (PubMed ID: 29269730)

  • 1. Promoter-enhancer interactions identified from Hi-C data using probabilistic models and hierarchical topological domains.
    Ron G; Globerson Y; Moran D; Kaplan T
    Nat Commun; 2017 Dec; 8(1):2237. PubMed ID: 29269730
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Different enhancer classes in Drosophila bind distinct architectural proteins and mediate unique chromatin interactions and 3D architecture.
    Cubeñas-Potts C; Rowley MJ; Lyu X; Li G; Lei EP; Corces VG
    Nucleic Acids Res; 2017 Feb; 45(4):1714-1730. PubMed ID: 27899590
    [TBL] [Abstract][Full Text] [Related]  

  • 3. ClusterTAD: an unsupervised machine learning approach to detecting topologically associated domains of chromosomes from Hi-C data.
    Oluwadare O; Cheng J
    BMC Bioinformatics; 2017 Nov; 18(1):480. PubMed ID: 29137603
    [TBL] [Abstract][Full Text] [Related]  

  • 4. InTAD: chromosome conformation guided analysis of enhancer target genes.
    Okonechnikov K; Erkek S; Korbel JO; Pfister SM; Chavez L
    BMC Bioinformatics; 2019 Jan; 20(1):60. PubMed ID: 30704404
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Co-regulation of paralog genes in the three-dimensional chromatin architecture.
    Ibn-Salem J; Muro EM; Andrade-Navarro MA
    Nucleic Acids Res; 2017 Jan; 45(1):81-91. PubMed ID: 27634932
    [TBL] [Abstract][Full Text] [Related]  

  • 6. MSTD: an efficient method for detecting multi-scale topological domains from symmetric and asymmetric 3D genomic maps.
    Ye Y; Gao L; Zhang S
    Nucleic Acids Res; 2019 Jun; 47(11):e65. PubMed ID: 30941409
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Computational Analysis of Hi-C Data.
    Forcato M; Bicciato S
    Methods Mol Biol; 2021; 2157():103-125. PubMed ID: 32820401
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Modelling genome-wide topological associating domains in mouse embryonic stem cells.
    Zhan Y; Giorgetti L; Tiana G
    Chromosome Res; 2017 Mar; 25(1):5-14. PubMed ID: 28108933
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Practical Analysis of Hi-C Data: Generating A/B Compartment Profiles.
    Miura H; Poonperm R; Takahashi S; Hiratani I
    Methods Mol Biol; 2018; 1861():221-245. PubMed ID: 30218370
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Mapping of long-range chromatin interactions by proximity ligation-assisted ChIP-seq.
    Fang R; Yu M; Li G; Chee S; Liu T; Schmitt AD; Ren B
    Cell Res; 2016 Dec; 26(12):1345-1348. PubMed ID: 27886167
    [No Abstract]   [Full Text] [Related]  

  • 11. HiC-DC+ enables systematic 3D interaction calls and differential analysis for Hi-C and HiChIP.
    Sahin M; Wong W; Zhan Y; Van Deynze K; Koche R; Leslie CS
    Nat Commun; 2021 Jun; 12(1):3366. PubMed ID: 34099725
    [TBL] [Abstract][Full Text] [Related]  

  • 12. CD8
    He B; Xing S; Chen C; Gao P; Teng L; Shan Q; Gullicksrud JA; Martin MD; Yu S; Harty JT; Badovinac VP; Tan K; Xue HH
    Immunity; 2016 Dec; 45(6):1341-1354. PubMed ID: 27986453
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Determination of the 3D Genome Organization of Bacteria Using Hi-C.
    Crémazy FG; Rashid FM; Haycocks JR; Lamberte LE; Grainger DC; Dame RT
    Methods Mol Biol; 2018; 1837():3-18. PubMed ID: 30109602
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Toward predictive R-loop computational biology: genome-scale prediction of R-loops reveals their association with complex promoter structures, G-quadruplexes and transcriptionally active enhancers.
    Kuznetsov VA; Bondarenko V; Wongsurawat T; Yenamandra SP; Jenjaroenpun P
    Nucleic Acids Res; 2018 Sep; 46(15):7566-7585. PubMed ID: 29945198
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Epigenetics of Muscle- and Brain-Specific Expression of KLHL Family Genes.
    Ehrlich KC; Baribault C; Ehrlich M
    Int J Mol Sci; 2020 Nov; 21(21):. PubMed ID: 33182325
    [No Abstract]   [Full Text] [Related]  

  • 16. Assessment of 3D Interactions Between Promoters and Distal Regulatory Elements with Promoter Capture Hi-C (PCHi-C).
    Karasu N; Sexton T
    Methods Mol Biol; 2021; 2351():229-248. PubMed ID: 34382193
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Three-dimensional disorganization of the cancer genome occurs coincident with long-range genetic and epigenetic alterations.
    Taberlay PC; Achinger-Kawecka J; Lun AT; Buske FA; Sabir K; Gould CM; Zotenko E; Bert SA; Giles KA; Bauer DC; Smyth GK; Stirzaker C; O'Donoghue SI; Clark SJ
    Genome Res; 2016 Jun; 26(6):719-31. PubMed ID: 27053337
    [TBL] [Abstract][Full Text] [Related]  

  • 18. OCEAN-C: mapping hubs of open chromatin interactions across the genome reveals gene regulatory networks.
    Li T; Jia L; Cao Y; Chen Q; Li C
    Genome Biol; 2018 Apr; 19(1):54. PubMed ID: 29690904
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Evolutionary stability of topologically associating domains is associated with conserved gene regulation.
    Krefting J; Andrade-Navarro MA; Ibn-Salem J
    BMC Biol; 2018 Aug; 16(1):87. PubMed ID: 30086749
    [TBL] [Abstract][Full Text] [Related]  

  • 20. HiTAD: detecting the structural and functional hierarchies of topologically associating domains from chromatin interactions.
    Wang XT; Cui W; Peng C
    Nucleic Acids Res; 2017 Nov; 45(19):e163. PubMed ID: 28977529
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 18.