BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

308 related articles for article (PubMed ID: 29272348)

  • 1. TCGA-assembler 2: software pipeline for retrieval and processing of TCGA/CPTAC data.
    Wei L; Jin Z; Yang S; Xu Y; Zhu Y; Ji Y
    Bioinformatics; 2018 May; 34(9):1615-1617. PubMed ID: 29272348
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Integration and Analysis of CPTAC Proteomics Data in the Context of Cancer Genomics in the cBioPortal.
    Wu P; Heins ZJ; Muller JT; Katsnelson L; de Bruijn I; Abeshouse AA; Schultz N; Fenyö D; Gao J
    Mol Cell Proteomics; 2019 Sep; 18(9):1893-1898. PubMed ID: 31308250
    [TBL] [Abstract][Full Text] [Related]  

  • 3. TCGA Expedition: A Data Acquisition and Management System for TCGA Data.
    Chandran UR; Medvedeva OP; Barmada MM; Blood PD; Chakka A; Luthra S; Ferreira A; Wong KF; Lee AV; Zhang Z; Budden R; Scott JR; Berndt A; Berg JM; Jacobson RS
    PLoS One; 2016; 11(10):e0165395. PubMed ID: 27788220
    [TBL] [Abstract][Full Text] [Related]  

  • 4. The CPTAC Data Portal: A Resource for Cancer Proteomics Research.
    Edwards NJ; Oberti M; Thangudu RR; Cai S; McGarvey PB; Jacob S; Madhavan S; Ketchum KA
    J Proteome Res; 2015 Jun; 14(6):2707-13. PubMed ID: 25873244
    [TBL] [Abstract][Full Text] [Related]  

  • 5. TCGA2STAT: simple TCGA data access for integrated statistical analysis in R.
    Wan YW; Allen GI; Liu Z
    Bioinformatics; 2016 Mar; 32(6):952-4. PubMed ID: 26568634
    [TBL] [Abstract][Full Text] [Related]  

  • 6. A Description of the Clinical Proteomic Tumor Analysis Consortium (CPTAC) Common Data Analysis Pipeline.
    Rudnick PA; Markey SP; Roth J; Mirokhin Y; Yan X; Tchekhovskoi DV; Edwards NJ; Thangudu RR; Ketchum KA; Kinsinger CR; Mesri M; Rodriguez H; Stein SE
    J Proteome Res; 2016 Mar; 15(3):1023-32. PubMed ID: 26860878
    [TBL] [Abstract][Full Text] [Related]  

  • 7. LinkedOmics: analyzing multi-omics data within and across 32 cancer types.
    Vasaikar SV; Straub P; Wang J; Zhang B
    Nucleic Acids Res; 2018 Jan; 46(D1):D956-D963. PubMed ID: 29136207
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Simplified and Unified Access to Cancer Proteogenomic Data.
    Lindgren CM; Adams DW; Kimball B; Boekweg H; Tayler S; Pugh SL; Payne SH
    J Proteome Res; 2021 Apr; 20(4):1902-1910. PubMed ID: 33560848
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Empowering biologists with multi-omics data: colorectal cancer as a paradigm.
    Zhu J; Shi Z; Wang J; Zhang B
    Bioinformatics; 2015 May; 31(9):1436-43. PubMed ID: 25527095
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Exploring drivers of gene expression in the Cancer Genome Atlas.
    Rau A; Flister M; Rui H; Auer PL
    Bioinformatics; 2019 Jan; 35(1):62-68. PubMed ID: 30561551
    [TBL] [Abstract][Full Text] [Related]  

  • 11. BatchQC: interactive software for evaluating sample and batch effects in genomic data.
    Manimaran S; Selby HM; Okrah K; Ruberman C; Leek JT; Quackenbush J; Haibe-Kains B; Bravo HC; Johnson WE
    Bioinformatics; 2016 Dec; 32(24):3836-3838. PubMed ID: 27540268
    [TBL] [Abstract][Full Text] [Related]  

  • 12. The Cancer Genome Atlas Clinical Explorer: a web and mobile interface for identifying clinical-genomic driver associations.
    Lee H; Palm J; Grimes SM; Ji HP
    Genome Med; 2015 Oct; 7():112. PubMed ID: 26507825
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Zodiac: A Comprehensive Depiction of Genetic Interactions in Cancer by Integrating TCGA Data.
    Zhu Y; Xu Y; Helseth DL; Gulukota K; Yang S; Pesce LL; Mitra R; Müller P; Sengupta S; Guo W; Silverstein JC; Foster I; Parsad N; White KP; Ji Y
    J Natl Cancer Inst; 2015 Aug; 107(8):. PubMed ID: 25956356
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Alternative preprocessing of RNA-Sequencing data in The Cancer Genome Atlas leads to improved analysis results.
    Rahman M; Jackson LK; Johnson WE; Li DY; Bild AH; Piccolo SR
    Bioinformatics; 2015 Nov; 31(22):3666-72. PubMed ID: 26209429
    [TBL] [Abstract][Full Text] [Related]  

  • 15. UCSCXenaShiny: an R/CRAN package for interactive analysis of UCSC Xena data.
    Wang S; Xiong Y; Zhao L; Gu K; Li Y; Zhao F; Li J; Wang M; Wang H; Tao Z; Wu T; Zheng Y; Li X; Liu XS
    Bioinformatics; 2022 Jan; 38(2):527-529. PubMed ID: 34323947
    [TBL] [Abstract][Full Text] [Related]  

  • 16. A Practical Guide to The Cancer Genome Atlas (TCGA).
    Wang Z; Jensen MA; Zenklusen JC
    Methods Mol Biol; 2016; 1418():111-41. PubMed ID: 27008012
    [TBL] [Abstract][Full Text] [Related]  

  • 17. GlyGen data model and processing workflow.
    Kahsay R; Vora J; Navelkar R; Mousavi R; Fochtman BC; Holmes X; Pattabiraman N; Ranzinger R; Mahadik R; Williamson T; Kulkarni S; Agarwal G; Martin M; Vasudev P; Garcia L; Edwards N; Zhang W; Natale DA; Ross K; Aoki-Kinoshita KF; Campbell MP; York WS; Mazumder R
    Bioinformatics; 2020 Jun; 36(12):3941-3943. PubMed ID: 32324859
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Computational identification of micro-structural variations and their proteogenomic consequences in cancer.
    Lin YY; Gawronski A; Hach F; Li S; Numanagic I; Sarrafi I; Mishra S; McPherson A; Collins CC; Radovich M; Tang H; Sahinalp SC
    Bioinformatics; 2018 May; 34(10):1672-1681. PubMed ID: 29267878
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Extending TCGA queries to automatically identify analogous genomic data from dbGaP.
    Wagner EK; Raje S; Amos L; Kurata J; Badve AS; Li Y; Busby B
    F1000Res; 2017; 6():319. PubMed ID: 28794857
    [TBL] [Abstract][Full Text] [Related]  

  • 20. UALCAN: An update to the integrated cancer data analysis platform.
    Chandrashekar DS; Karthikeyan SK; Korla PK; Patel H; Shovon AR; Athar M; Netto GJ; Qin ZS; Kumar S; Manne U; Creighton CJ; Varambally S
    Neoplasia; 2022 Mar; 25():18-27. PubMed ID: 35078134
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 16.