These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

78 related articles for article (PubMed ID: 29281093)

  • 1. Large-scale determination and characterization of cell type-specific regulatory elements in the human genome.
    Wang C; Zhang S
    J Mol Cell Biol; 2017 Dec; 9(6):463-476. PubMed ID: 29281093
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Epigenomic analysis reveals DNA motifs regulating histone modifications in human and mouse.
    Ngo V; Chen Z; Zhang K; Whitaker JW; Wang M; Wang W
    Proc Natl Acad Sci U S A; 2019 Feb; 116(9):3668-3677. PubMed ID: 30755522
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Reveal cell type-specific regulatory elements and their characterized histone code classes via a hidden Markov model.
    Wang C; Zhang S
    BMC Genomics; 2018 Dec; 19(Suppl 10):903. PubMed ID: 30598107
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Decoding regulatory structures and features from epigenomics profiles: A Roadmap-ENCODE Variational Auto-Encoder (RE-VAE) model.
    Hu R; Pei G; Jia P; Zhao Z
    Methods; 2021 May; 189():44-53. PubMed ID: 31672653
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Discovery of cell-type specific regulatory elements in the human genome using differential chromatin modification analysis.
    Chen C; Zhang S; Zhang XS
    Nucleic Acids Res; 2013 Nov; 41(20):9230-42. PubMed ID: 23945931
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Joint profiling of histone modifications and transcriptome in single cells from mouse brain.
    Zhu C; Zhang Y; Li YE; Lucero J; Behrens MM; Ren B
    Nat Methods; 2021 Mar; 18(3):283-292. PubMed ID: 33589836
    [TBL] [Abstract][Full Text] [Related]  

  • 7. EpiCompare: an online tool to define and explore genomic regions with tissue or cell type-specific epigenomic features.
    He Y; Wang T
    Bioinformatics; 2017 Oct; 33(20):3268-3275. PubMed ID: 28605501
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Histone modifications in zebrafish development.
    Cunliffe VT
    Methods Cell Biol; 2016; 135():361-85. PubMed ID: 27443936
    [TBL] [Abstract][Full Text] [Related]  

  • 9. A single-cell atlas of chromatin accessibility in the human genome.
    Zhang K; Hocker JD; Miller M; Hou X; Chiou J; Poirion OB; Qiu Y; Li YE; Gaulton KJ; Wang A; Preissl S; Ren B
    Cell; 2021 Nov; 184(24):5985-6001.e19. PubMed ID: 34774128
    [TBL] [Abstract][Full Text] [Related]  

  • 10. hiHMM: Bayesian non-parametric joint inference of chromatin state maps.
    Sohn KA; Ho JW; Djordjevic D; Jeong HH; Park PJ; Kim JH
    Bioinformatics; 2015 Jul; 31(13):2066-74. PubMed ID: 25725496
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Characterization of noncoding regulatory DNA in the human genome.
    Elkon R; Agami R
    Nat Biotechnol; 2017 Aug; 35(8):732-746. PubMed ID: 28787426
    [TBL] [Abstract][Full Text] [Related]  

  • 12. ChARM: Discovery of combinatorial chromatin modification patterns in hepatitis B virus X-transformed mouse liver cancer using association rule mining.
    Park SH; Lee SM; Kim YJ; Kim S
    BMC Bioinformatics; 2016 Dec; 17(Suppl 16):452. PubMed ID: 28105934
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Direct prediction of regulatory elements from partial data without imputation.
    Zhang Y; Mahony S
    PLoS Comput Biol; 2019 Nov; 15(11):e1007399. PubMed ID: 31682602
    [TBL] [Abstract][Full Text] [Related]  

  • 14. ChromClust: A semi-supervised chromatin clustering toolkit for mining histone modifications interplay.
    Noureen N; Touseef M; Fazal S; Qadir MA
    Genomics; 2015 Dec; 106(6):355-9. PubMed ID: 26551295
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Chromatin proteomics reveals novel combinatorial histone modification signatures that mark distinct subpopulations of macrophage enhancers.
    Soldi M; Mari T; Nicosia L; Musiani D; Sigismondo G; Cuomo A; Pavesi G; Bonaldi T
    Nucleic Acids Res; 2017 Dec; 45(21):12195-12213. PubMed ID: 28981749
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Predicting chromatin organization using histone marks.
    Huang J; Marco E; Pinello L; Yuan GC
    Genome Biol; 2015 Aug; 16(1):162. PubMed ID: 26272203
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Identification of recurrent combinatorial patterns of chromatin modifications at promoters across various tissue types.
    Meng N; Machiraju R; Huang K
    BMC Bioinformatics; 2016 Dec; 17(Suppl 17):534. PubMed ID: 28155643
    [TBL] [Abstract][Full Text] [Related]  

  • 18. ChromBiSim: Interactive chromatin biclustering using a simple approach.
    Noureen N; Zohaib HM; Qadir MA; Fazal S
    Genomics; 2017 Oct; 109(5-6):353-361. PubMed ID: 28579515
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Identification and characterization of cell type-specific and ubiquitous chromatin regulatory structures in the human genome.
    Xi H; Shulha HP; Lin JM; Vales TR; Fu Y; Bodine DM; McKay RD; Chenoweth JG; Tesar PJ; Furey TS; Ren B; Weng Z; Crawford GE
    PLoS Genet; 2007 Aug; 3(8):e136. PubMed ID: 17708682
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Chromatin segmentation based on a probabilistic model for read counts explains a large portion of the epigenome.
    Mammana A; Chung HR
    Genome Biol; 2015 Jul; 16(1):151. PubMed ID: 26206277
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 4.