301 related articles for article (PubMed ID: 29284660)
1. The ModERN Resource: Genome-Wide Binding Profiles for Hundreds of
Kudron MM; Victorsen A; Gevirtzman L; Hillier LW; Fisher WW; Vafeados D; Kirkey M; Hammonds AS; Gersch J; Ammouri H; Wall ML; Moran J; Steffen D; Szynkarek M; Seabrook-Sturgis S; Jameel N; Kadaba M; Patton J; Terrell R; Corson M; Durham TJ; Park S; Samanta S; Han M; Xu J; Yan KK; Celniker SE; White KP; Ma L; Gerstein M; Reinke V; Waterston RH
Genetics; 2018 Mar; 208(3):937-949. PubMed ID: 29284660
[TBL] [Abstract][Full Text] [Related]
2. Binding profiles for 954 Drosophila and
Kudron M; Gevirtzman L; Victorsen A; Lear BC; Gao J; Xu J; Samanta S; Frink E; Tran-Pearson A; Huynh C; Vafeados D; Hammonds A; Fisher W; Wall M; Wesseling G; Hernandez V; Lin Z; Kasparian M; White K; Allada R; Gerstein M; Hillier L; Celniker SE; Reinke V; Waterston RH
bioRxiv; 2024 Jan; ():. PubMed ID: 38293065
[TBL] [Abstract][Full Text] [Related]
3. A modERN resource: identification of Drosophila transcription factor candidate target genes using RNAi.
Fisher WW; Hammonds AS; Weiszmann R; Booth BW; Gevirtzman L; Patton JEJ; Kubo CA; Waterston RH; Celniker SE
Genetics; 2023 Apr; 223(4):. PubMed ID: 36652461
[TBL] [Abstract][Full Text] [Related]
4. Comparative analysis of function and interaction of transcription factors in nematodes: extensive conservation of orthology coupled to rapid sequence evolution.
Haerty W; Artieri C; Khezri N; Singh RS; Gupta BP
BMC Genomics; 2008 Aug; 9():399. PubMed ID: 18752680
[TBL] [Abstract][Full Text] [Related]
5. The comprehensive transcriptional analysis in Caenorhabditis elegans by integrating ChIP-seq and gene expression data.
He K; Shao J; Zhao Z; Liu D
Genet Res (Camb); 2014; 96():e005. PubMed ID: 25023089
[TBL] [Abstract][Full Text] [Related]
6. Lessons from modENCODE.
Brown JB; Celniker SE
Annu Rev Genomics Hum Genet; 2015; 16():31-53. PubMed ID: 26133010
[TBL] [Abstract][Full Text] [Related]
7. Integrative analysis of C. elegans modENCODE ChIP-seq data sets to infer gene regulatory interactions.
Van Nostrand EL; Kim SK
Genome Res; 2013 Jun; 23(6):941-53. PubMed ID: 23531767
[TBL] [Abstract][Full Text] [Related]
8. Chromatin immunoprecipitation and multiplex sequencing (ChIP-Seq) to identify global transcription factor binding sites in the nematode Caenorhabditis elegans.
Brdlik CM; Niu W; Snyder M
Methods Enzymol; 2014; 539():89-111. PubMed ID: 24581441
[TBL] [Abstract][Full Text] [Related]
9. COPS: detecting co-occurrence and spatial arrangement of transcription factor binding motifs in genome-wide datasets.
Ha N; Polychronidou M; Lohmann I
PLoS One; 2012; 7(12):e52055. PubMed ID: 23272209
[TBL] [Abstract][Full Text] [Related]
10. Uncovering cis-regulatory sequence requirements for context-specific transcription factor binding.
Yáñez-Cuna JO; Dinh HQ; Kvon EZ; Shlyueva D; Stark A
Genome Res; 2012 Oct; 22(10):2018-30. PubMed ID: 22534400
[TBL] [Abstract][Full Text] [Related]
11. Nonconsensus Protein Binding to Repetitive DNA Sequence Elements Significantly Affects Eukaryotic Genomes.
Afek A; Cohen H; Barber-Zucker S; Gordân R; Lukatsky DB
PLoS Comput Biol; 2015 Aug; 11(8):e1004429. PubMed ID: 26285121
[TBL] [Abstract][Full Text] [Related]
12. Genome-wide analysis of condensin binding in Caenorhabditis elegans.
Kranz AL; Jiao CY; Winterkorn LH; Albritton SE; Kramer M; Ercan S
Genome Biol; 2013; 14(10):R112. PubMed ID: 24125077
[TBL] [Abstract][Full Text] [Related]
13. Mapping and analysis of Caenorhabditis elegans transcription factor sequence specificities.
Narasimhan K; Lambert SA; Yang AW; Riddell J; Mnaimneh S; Zheng H; Albu M; Najafabadi HS; Reece-Hoyes JS; Fuxman Bass JI; Walhout AJ; Weirauch MT; Hughes TR
Elife; 2015 Apr; 4():. PubMed ID: 25905672
[TBL] [Abstract][Full Text] [Related]
14. Distinct DNA binding sites contribute to the TCF transcriptional switch in C. elegans and Drosophila.
Bhambhani C; Ravindranath AJ; Mentink RA; Chang MV; Betist MC; Yang YX; Koushika SP; Korswagen HC; Cadigan KM
PLoS Genet; 2014 Feb; 10(2):e1004133. PubMed ID: 24516405
[TBL] [Abstract][Full Text] [Related]
15. Comparative analysis of regulatory information and circuits across distant species.
Boyle AP; Araya CL; Brdlik C; Cayting P; Cheng C; Cheng Y; Gardner K; Hillier LW; Janette J; Jiang L; Kasper D; Kawli T; Kheradpour P; Kundaje A; Li JJ; Ma L; Niu W; Rehm EJ; Rozowsky J; Slattery M; Spokony R; Terrell R; Vafeados D; Wang D; Weisdepp P; Wu YC; Xie D; Yan KK; Feingold EA; Good PJ; Pazin MJ; Huang H; Bickel PJ; Brenner SE; Reinke V; Waterston RH; Gerstein M; White KP; Kellis M; Snyder M
Nature; 2014 Aug; 512(7515):453-6. PubMed ID: 25164757
[TBL] [Abstract][Full Text] [Related]
16. Fine tuning of RFX/DAF-19-regulated target gene expression through binding to multiple sites in Caenorhabditis elegans.
Chu JS; Tarailo-Graovac M; Zhang D; Wang J; Uyar B; Tu D; Trinh J; Baillie DL; Chen N
Nucleic Acids Res; 2012 Jan; 40(1):53-64. PubMed ID: 21908398
[TBL] [Abstract][Full Text] [Related]
17. Diverse transcription factor binding features revealed by genome-wide ChIP-seq in C. elegans.
Niu W; Lu ZJ; Zhong M; Sarov M; Murray JI; Brdlik CM; Janette J; Chen C; Alves P; Preston E; Slightham C; Jiang L; Hyman AA; Kim SK; Waterston RH; Gerstein M; Snyder M; Reinke V
Genome Res; 2011 Feb; 21(2):245-54. PubMed ID: 21177963
[TBL] [Abstract][Full Text] [Related]
18. Modelling the evolution of transcription factor binding preferences in complex eukaryotes.
Rosanova A; Colliva A; Osella M; Caselle M
Sci Rep; 2017 Aug; 7(1):7596. PubMed ID: 28790414
[TBL] [Abstract][Full Text] [Related]
19. modMine: flexible access to modENCODE data.
Contrino S; Smith RN; Butano D; Carr A; Hu F; Lyne R; Rutherford K; Kalderimis A; Sullivan J; Carbon S; Kephart ET; Lloyd P; Stinson EO; Washington NL; Perry MD; Ruzanov P; Zha Z; Lewis SE; Stein LD; Micklem G
Nucleic Acids Res; 2012 Jan; 40(Database issue):D1082-8. PubMed ID: 22080565
[TBL] [Abstract][Full Text] [Related]
20. Caenorhabditis elegans transposable elements harbor diverse transcription factor DNA-binding sites.
Garrigues JM; Pasquinelli AE
G3 (Bethesda); 2022 Mar; 12(3):. PubMed ID: 35088854
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
