BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

70 related articles for article (PubMed ID: 29293576)

  • 1. pyPaSWAS: Python-based multi-core CPU and GPU sequence alignment.
    Warris S; Timal NRN; Kempenaar M; Poortinga AM; van de Geest H; Varbanescu AL; Nap JP
    PLoS One; 2018; 13(1):e0190279. PubMed ID: 29293576
    [TBL] [Abstract][Full Text] [Related]  

  • 2. WFA-GPU: gap-affine pairwise read-alignment using GPUs.
    Aguado-Puig Q; Doblas M; Matzoros C; Espinosa A; Moure JC; Marco-Sola S; Moreto M
    Bioinformatics; 2023 Dec; 39(12):. PubMed ID: 37975878
    [TBL] [Abstract][Full Text] [Related]  

  • 3. GPU accelerated biochemical network simulation.
    Zhou Y; Liepe J; Sheng X; Stumpf MP; Barnes C
    Bioinformatics; 2011 Mar; 27(6):874-6. PubMed ID: 21224286
    [TBL] [Abstract][Full Text] [Related]  

  • 4. PxBLAT: an efficient python binding library for BLAT.
    Li Y; Yang R
    BMC Bioinformatics; 2024 Jun; 25(1):219. PubMed ID: 38898394
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Biotite: new tools for a versatile Python bioinformatics library.
    Kunzmann P; Müller TD; Greil M; Krumbach JH; Anter JM; Bauer D; Islam F; Hamacher K
    BMC Bioinformatics; 2023 Jun; 24(1):236. PubMed ID: 37277726
    [TBL] [Abstract][Full Text] [Related]  

  • 6. plotnineSeqSuite: a Python package for visualizing sequence data using ggplot2 style.
    Cao T; Li Q; Huang Y; Li A
    BMC Genomics; 2023 Oct; 24(1):585. PubMed ID: 37789265
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Pairwise alignment of nucleotide sequences using maximal exact matches.
    Bayat A; Gaëta B; Ignjatovic A; Parameswaran S
    BMC Bioinformatics; 2019 May; 20(1):261. PubMed ID: 31113356
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Cross-platform programming model for many-core lattice Boltzmann simulations.
    Latt J; Coreixas C; Beny J
    PLoS One; 2021; 16(4):e0250306. PubMed ID: 33914788
    [TBL] [Abstract][Full Text] [Related]  

  • 9. OpenStructure: an integrated software framework for computational structural biology.
    Biasini M; Schmidt T; Bienert S; Mariani V; Studer G; Haas J; Johner N; Schenk AD; Philippsen A; Schwede T
    Acta Crystallogr D Biol Crystallogr; 2013 May; 69(Pt 5):701-9. PubMed ID: 23633579
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Python as a federation tool for GENESIS 3.0.
    Cornelis H; Rodriguez AL; Coop AD; Bower JM
    PLoS One; 2012; 7(1):e29018. PubMed ID: 22276101
    [TBL] [Abstract][Full Text] [Related]  

  • 11. MC64-ClustalWP2: a highly-parallel hybrid strategy to align multiple sequences in many-core architectures.
    Díaz D; Esteban FJ; Hernández P; Caballero JA; Guevara A; Dorado G; Gálvez S
    PLoS One; 2014; 9(4):e94044. PubMed ID: 24710354
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Application Experiences on a GPU-Accelerated Arm-based HPC Testbed.
    Elwasif W; Godoy W; Hagerty N; Harris JA; Hernandez O; Joo B; Kent P; Lebrun-Grandié D; Maccarthy E; Melesse Ver-Gara VG; Messer B; Miller R; Oral S; Bastrakov S; Bussmann M; Debus A; Steiniger K; Stephan J; Widera R; Bryngelson SH; LE Berre H; Radhakrishnan A; Young J; Chandrasekaran S; Ciorba F; Simsek O; Clark K; Spiga F; Hammond J; Stone JE; Hardy D; Keller S; Piccinali JG; Trott C
    Proc Int Conf High Perform Comput Asia Pac Reg HPC Asia 2023 Workshops (2023); 2023 Feb; 2023():35-49. PubMed ID: 38197035
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Efficient Join Algorithms For Large Database Tables in a Multi-GPU Environment.
    Rui R; Li H; Tu YC
    Proceedings VLDB Endowment; 2020 Dec; 14(4):708-720. PubMed ID: 38260211
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Local alignment tool based on Hadoop framework and GPU architecture.
    Hung CL; Hua GJ
    Biomed Res Int; 2014; 2014():541490. PubMed ID: 24955362
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Exploring memory synchronization and performance considerations for FPGA platform using the high-abstracted OpenCL framework: Benchmarks development and analysis.
    Almomany A; Jarrah A; Sutcu M
    PLoS One; 2024; 19(5):e0301720. PubMed ID: 38739583
    [TBL] [Abstract][Full Text] [Related]  

  • 16. PyGeNN: A Python Library for GPU-Enhanced Neural Networks.
    Knight JC; Komissarov A; Nowotny T
    Front Neuroinform; 2021; 15():659005. PubMed ID: 33967731
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Portable BLAST-like algorithm library and its implementations for command line, Python, and R.
    Schmid S; Jeevannavar A; Julian TR; Tamminen M
    PLoS One; 2023; 18(11):e0289693. PubMed ID: 38032878
    [TBL] [Abstract][Full Text] [Related]  

  • 18. SciPy 1.0: fundamental algorithms for scientific computing in Python.
    Virtanen P; Gommers R; Oliphant TE; Haberland M; Reddy T; Cournapeau D; Burovski E; Peterson P; Weckesser W; Bright J; van der Walt SJ; Brett M; Wilson J; Millman KJ; Mayorov N; Nelson ARJ; Jones E; Kern R; Larson E; Carey CJ; Polat İ; Feng Y; Moore EW; VanderPlas J; Laxalde D; Perktold J; Cimrman R; Henriksen I; Quintero EA; Harris CR; Archibald AM; Ribeiro AH; Pedregosa F; van Mulbregt P;
    Nat Methods; 2020 Mar; 17(3):261-272. PubMed ID: 32015543
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Utilizing the open-source programming language Python to create interactive Quality Assurance dashboards for diagnostic and screening performance in Cytology.
    Kovács I; Székely T; Pogány P; Takács S; Erős M; Járay B
    J Am Soc Cytopathol; 2024; 13(4):309-318. PubMed ID: 38702208
    [TBL] [Abstract][Full Text] [Related]  

  • 20. CBMOS: a GPU-enabled Python framework for the numerical study of center-based models.
    Mathias S; Coulier A; Hellander A
    BMC Bioinformatics; 2022 Jan; 23(1):55. PubMed ID: 35100968
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 4.