507 related articles for article (PubMed ID: 29297295)
21. Improving metagenomic binning results with overlapped bins using assembly graphs.
Mallawaarachchi VG; Wickramarachchi AS; Lin Y
Algorithms Mol Biol; 2021 May; 16(1):3. PubMed ID: 33947431
[TBL] [Abstract][Full Text] [Related]
22. Binning metagenomic contigs by coverage and composition.
Alneberg J; Bjarnason BS; de Bruijn I; Schirmer M; Quick J; Ijaz UZ; Lahti L; Loman NJ; Andersson AF; Quince C
Nat Methods; 2014 Nov; 11(11):1144-6. PubMed ID: 25218180
[TBL] [Abstract][Full Text] [Related]
23. A scalable assembly-free variable selection algorithm for biomarker discovery from metagenomes.
Gkanogiannis A; Gazut S; Salanoubat M; Kanj S; Brüls T
BMC Bioinformatics; 2016 Aug; 17(1):311. PubMed ID: 27542753
[TBL] [Abstract][Full Text] [Related]
24. Supervised extraction of near-complete genomes from metagenomic samples: A new service in PATRIC.
Parrello B; Butler R; Chlenski P; Pusch GD; Overbeek R
PLoS One; 2021; 16(4):e0250092. PubMed ID: 33857229
[TBL] [Abstract][Full Text] [Related]
25. Evaluating
Vosloo S; Huo L; Anderson CL; Dai Z; Sevillano M; Pinto A
Microbiol Spectr; 2021 Dec; 9(3):e0143421. PubMed ID: 34730411
[TBL] [Abstract][Full Text] [Related]
26. MAGNETO: An Automated Workflow for Genome-Resolved Metagenomics.
Churcheward B; Millet M; Bihouée A; Fertin G; Chaffron S
mSystems; 2022 Aug; 7(4):e0043222. PubMed ID: 35703559
[TBL] [Abstract][Full Text] [Related]
27. Binnacle: Using Scaffolds to Improve the Contiguity and Quality of Metagenomic Bins.
Muralidharan HS; Shah N; Meisel JS; Pop M
Front Microbiol; 2021; 12():638561. PubMed ID: 33717033
[TBL] [Abstract][Full Text] [Related]
28. Metaphor-A workflow for streamlined assembly and binning of metagenomes.
Salazar VW; Shaban B; Quiroga MDM; Turnbull R; Tescari E; Rossetto Marcelino V; Verbruggen H; Lê Cao KA
Gigascience; 2022 Dec; 12():. PubMed ID: 37522759
[TBL] [Abstract][Full Text] [Related]
29. A robust and accurate binning algorithm for metagenomic sequences with arbitrary species abundance ratio.
Leung HC; Yiu SM; Yang B; Peng Y; Wang Y; Liu Z; Chen J; Qin J; Li R; Chin FY
Bioinformatics; 2011 Jun; 27(11):1489-95. PubMed ID: 21493653
[TBL] [Abstract][Full Text] [Related]
30. MaxBin: an automated binning method to recover individual genomes from metagenomes using an expectation-maximization algorithm.
Wu YW; Tang YH; Tringe SG; Simmons BA; Singer SW
Microbiome; 2014; 2():26. PubMed ID: 25136443
[TBL] [Abstract][Full Text] [Related]
31. MetaCRS: unsupervised clustering of contigs with the recursive strategy of reducing metagenomic dataset's complexity.
Jiang Z; Li X; Guo L
BMC Bioinformatics; 2022 Jan; 22(Suppl 12):315. PubMed ID: 35045830
[TBL] [Abstract][Full Text] [Related]
32. COCACOLA: binning metagenomic contigs using sequence COmposition, read CoverAge, CO-alignment and paired-end read LinkAge.
Lu YY; Chen T; Fuhrman JA; Sun F
Bioinformatics; 2017 Mar; 33(6):791-798. PubMed ID: 27256312
[TBL] [Abstract][Full Text] [Related]
33. A binning tool to reconstruct viral haplotypes from assembled contigs.
Chen J; Shang J; Wang J; Sun Y
BMC Bioinformatics; 2019 Nov; 20(1):544. PubMed ID: 31684876
[TBL] [Abstract][Full Text] [Related]
34. Subsampled Assemblies and Hybrid Nucleotide Composition/Differential Coverage Binning for Genome-Resolved Metagenomics.
Hug LA
Methods Mol Biol; 2018; 1849():215-225. PubMed ID: 30298257
[TBL] [Abstract][Full Text] [Related]
35. Fragmentation and Coverage Variation in Viral Metagenome Assemblies, and Their Effect in Diversity Calculations.
García-López R; Vázquez-Castellanos JF; Moya A
Front Bioeng Biotechnol; 2015; 3():141. PubMed ID: 26442255
[TBL] [Abstract][Full Text] [Related]
36. The binning of metagenomic contigs for microbial physiology of mixed cultures.
Strous M; Kraft B; Bisdorf R; Tegetmeyer HE
Front Microbiol; 2012; 3():410. PubMed ID: 23227024
[TBL] [Abstract][Full Text] [Related]
37. MetaConClust - Unsupervised Binning of Metagenomics Data using Consensus Clustering.
Sinha D; Sharma A; Mishra DC; Rai A; Lal SB; Kumar S; Farooqi MS; Chaturvedi KK
Curr Genomics; 2022 Jun; 23(2):137-146. PubMed ID: 36778980
[No Abstract] [Full Text] [Related]
38. CoCoNet: an efficient deep learning tool for viral metagenome binning.
Arisdakessian CG; Nigro OD; Steward GF; Poisson G; Belcaid M
Bioinformatics; 2021 Sep; 37(18):2803-2810. PubMed ID: 33822891
[TBL] [Abstract][Full Text] [Related]
39. MetaCluster-TA: taxonomic annotation for metagenomic data based on assembly-assisted binning.
Wang Y; Leung H; Yiu S; Chin F
BMC Genomics; 2014; 15 Suppl 1(Suppl 1):S12. PubMed ID: 24564377
[TBL] [Abstract][Full Text] [Related]
40. A New Unsupervised Binning Approach for Metagenomic Sequences Based on N-grams and Automatic Feature Weighting.
Liao R; Zhang R; Guan J; Zhou S
IEEE/ACM Trans Comput Biol Bioinform; 2014; 11(1):42-54. PubMed ID: 26355506
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]
