These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

160 related articles for article (PubMed ID: 29298299)

  • 1. HTSSIP: An R package for analysis of high throughput sequencing data from nucleic acid stable isotope probing (SIP) experiments.
    Youngblut ND; Barnett SE; Buckley DH
    PLoS One; 2018; 13(1):e0189616. PubMed ID: 29298299
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Data Analysis for DNA Stable Isotope Probing Experiments Using Multiple Window High-Resolution SIP.
    Barnett SE; Youngblut ND; Buckley DH
    Methods Mol Biol; 2019; 2046():109-128. PubMed ID: 31407300
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Quantitative stable isotope probing technique and its applications in microbial ecology.
    Zou WX; Shen JP; Zhang LM; Hu A; Wang JJ; He JZ
    Ying Yong Sheng Tai Xue Bao; 2021 Jul; 32(7):2615-2622. PubMed ID: 34313080
    [TBL] [Abstract][Full Text] [Related]  

  • 4. A standardized quantitative analysis strategy for stable isotope probing metagenomics.
    Vyshenska D; Sampara P; Singh K; Tomatsu A; Kauffman WB; Nuccio EE; Blazewicz SJ; Pett-Ridge J; Louie KB; Varghese N; Kellom M; Clum A; Riley R; Roux S; Eloe-Fadrosh EA; Ziels RM; Malmstrom RR
    mSystems; 2023 Aug; 8(4):e0128022. PubMed ID: 37377419
    [TBL] [Abstract][Full Text] [Related]  

  • 5. SIPSim: A Modeling Toolkit to Predict Accuracy and Aid Design of DNA-SIP Experiments.
    Youngblut ND; Barnett SE; Buckley DH
    Front Microbiol; 2018; 9():570. PubMed ID: 29643843
    [TBL] [Abstract][Full Text] [Related]  

  • 6. DNA-, RNA-, and Protein-Based Stable-Isotope Probing for High-Throughput Biomarker Analysis of Active Microorganisms.
    Jameson E; Taubert M; Coyotzi S; Chen Y; Eyice Ö; Schäfer H; Murrell JC; Neufeld JD; Dumont MG
    Methods Mol Biol; 2017; 1539():57-74. PubMed ID: 27900684
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Pasha: a versatile R package for piling chromatin HTS data.
    Fenouil R; Descostes N; Spinelli L; Koch F; Maqbool MA; Benoukraf T; Cauchy P; Innocenti C; Ferrier P; Andrau JC
    Bioinformatics; 2016 Aug; 32(16):2528-30. PubMed ID: 27153642
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Ultra-high-sensitivity stable-isotope probing of rRNA by high-throughput sequencing of isopycnic centrifugation gradients.
    Aoyagi T; Hanada S; Itoh H; Sato Y; Ogata A; Friedrich MW; Kikuchi Y; Hori T
    Environ Microbiol Rep; 2015 Apr; 7(2):282-7. PubMed ID: 25403652
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Miso: an R package for multiple isotope labeling assisted metabolomics data analysis.
    Dong Y; Feldberg L; Aharoni A
    Bioinformatics; 2019 Sep; 35(18):3524-3526. PubMed ID: 30726876
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Targeted Metatranscriptomics of Soil Microbial Communities with Stable Isotope Probing.
    Hu A; Lu Y; Hernández García M; Dumont MG
    Methods Mol Biol; 2019; 2046():163-174. PubMed ID: 31407304
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Ultra-sensitive isotope probing to quantify activity and substrate assimilation in microbiomes.
    Kleiner M; Kouris A; Violette M; D'Angelo G; Liu Y; Korenek A; Tolić N; Sachsenberg T; McCalder J; Lipton MS; Strous M
    Microbiome; 2023 Feb; 11(1):24. PubMed ID: 36755313
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Measurement Error and Resolution in Quantitative Stable Isotope Probing: Implications for Experimental Design.
    Sieradzki ET; Koch BJ; Greenlon A; Sachdeva R; Malmstrom RR; Mau RL; Blazewicz SJ; Firestone MK; Hofmockel KS; Schwartz E; Hungate BA; Pett-Ridge J
    mSystems; 2020 Jul; 5(4):. PubMed ID: 32694124
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Profiling of Active Microorganisms by Stable Isotope Probing-Metagenomics.
    Kröber E; Eyice Ö
    Methods Mol Biol; 2019; 2046():151-161. PubMed ID: 31407303
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Automated data extraction from in situ protein-stable isotope probing studies.
    Slysz GW; Steinke L; Ward DM; Klatt CG; Clauss TR; Purvine SO; Payne SH; Anderson GA; Smith RD; Lipton MS
    J Proteome Res; 2014 Mar; 13(3):1200-10. PubMed ID: 24467184
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Stable Isotope Probing Techniques and Methodological Considerations Using
    Angel R
    Methods Mol Biol; 2019; 2046():175-187. PubMed ID: 31407305
    [TBL] [Abstract][Full Text] [Related]  

  • 16. A novel method to characterize bacterial communities affected by carbon source and electricity generation in microbial fuel cells using stable isotope probing and Illumina sequencing.
    Song Y; Xiao L; Jayamani I; He Z; Cupples AM
    J Microbiol Methods; 2015 Jan; 108():4-11. PubMed ID: 25448023
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Simulating metagenomic stable isotope probing datasets with MetaSIPSim.
    Barnett SE; Buckley DH
    BMC Bioinformatics; 2020 Jan; 21(1):37. PubMed ID: 32000676
    [TBL] [Abstract][Full Text] [Related]  

  • 18. tcR: an R package for T cell receptor repertoire advanced data analysis.
    Nazarov VI; Pogorelyy MV; Komech EA; Zvyagin IV; Bolotin DA; Shugay M; Chudakov DM; Lebedev YB; Mamedov IZ
    BMC Bioinformatics; 2015 May; 16(1):175. PubMed ID: 26017500
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Escher-Trace: a web application for pathway-based visualization of stable isotope tracing data.
    Kumar A; Mitchener J; King ZA; Metallo CM
    BMC Bioinformatics; 2020 Jul; 21(1):297. PubMed ID: 32650717
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Quantitative microbial ecology through stable isotope probing.
    Hungate BA; Mau RL; Schwartz E; Caporaso JG; Dijkstra P; van Gestel N; Koch BJ; Liu CM; McHugh TA; Marks JC; Morrissey EM; Price LB
    Appl Environ Microbiol; 2015 Nov; 81(21):7570-81. PubMed ID: 26296731
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.