These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

251 related articles for article (PubMed ID: 29306299)

  • 41. Monte Carlo versus molecular dynamics simulations in heterogeneous systems: an application to the n-pentane liquid-vapor interface.
    Goujon F; Malfreyt P; Simon JM; Boutin A; Rousseau B; Fuchs AH
    J Chem Phys; 2004 Dec; 121(24):12559-71. PubMed ID: 15606277
    [TBL] [Abstract][Full Text] [Related]  

  • 42. Hamiltonian Switch Metropolis Monte Carlo Simulations for Improved Conformational Sampling of Intrinsically Disordered Regions Tethered to Ordered Domains of Proteins.
    Mittal A; Lyle N; Harmon TS; Pappu RV
    J Chem Theory Comput; 2014 Aug; 10(8):3550-3562. PubMed ID: 25136274
    [TBL] [Abstract][Full Text] [Related]  

  • 43. A new Hybrid Monte Carlo algorithm for protein potential function test and structure refinement.
    Zhang H
    Proteins; 1999 Mar; 34(4):464-71. PubMed ID: 10081959
    [TBL] [Abstract][Full Text] [Related]  

  • 44. Significance of conformational biases in Monte Carlo simulations of protein folding: lessons from Metropolis-Hastings approach.
    Przytycka T
    Proteins; 2004 Nov; 57(2):338-44. PubMed ID: 15340921
    [TBL] [Abstract][Full Text] [Related]  

  • 45. A Novel Hybrid Monte Carlo Algorithm for Sampling Path Space.
    Pinski FJ
    Entropy (Basel); 2021 Apr; 23(5):. PubMed ID: 33922040
    [TBL] [Abstract][Full Text] [Related]  

  • 46. Anharmonic force constants extracted from first-principles molecular dynamics: applications to heat transfer simulations.
    Tadano T; Gohda Y; Tsuneyuki S
    J Phys Condens Matter; 2014 Jun; 26(22):225402. PubMed ID: 24824156
    [TBL] [Abstract][Full Text] [Related]  

  • 47. Monte Carlo vs molecular dynamics for all-atom polypeptide folding simulations.
    Ulmschneider JP; Ulmschneider MB; Di Nola A
    J Phys Chem B; 2006 Aug; 110(33):16733-42. PubMed ID: 16913813
    [TBL] [Abstract][Full Text] [Related]  

  • 48. Parallel Monte Carlo simulations using a residence weight algorithm.
    Athènes M
    Phys Rev E Stat Nonlin Soft Matter Phys; 2002 Jul; 66(1 Pt 2):016701. PubMed ID: 12241510
    [TBL] [Abstract][Full Text] [Related]  

  • 49. Adaptive Splitting Integrators for Enhancing Sampling Efficiency of Modified Hamiltonian Monte Carlo Methods in Molecular Simulation.
    Akhmatskaya E; Fernández-Pendás M; Radivojević T; Sanz-Serna JM
    Langmuir; 2017 Oct; 33(42):11530-11542. PubMed ID: 28689416
    [TBL] [Abstract][Full Text] [Related]  

  • 50. Brownian Dynamics, Molecular Dynamics, and Monte Carlo modeling of colloidal systems.
    Chen JC; Kim AS
    Adv Colloid Interface Sci; 2004 Dec; 112(1-3):159-73. PubMed ID: 15581559
    [TBL] [Abstract][Full Text] [Related]  

  • 51. Development of a generalized hybrid Monte Carlo algorithm to generate the multicanonical ensemble with applications to molecular systems.
    Mukuta N; Miura S
    J Chem Phys; 2018 Aug; 149(7):072322. PubMed ID: 30134718
    [TBL] [Abstract][Full Text] [Related]  

  • 52. Coarse-grained Monte Carlo simulations of non-equilibrium systems.
    Liu X; Crocker JC; Sinno T
    J Chem Phys; 2013 Jun; 138(24):244111. PubMed ID: 23822231
    [TBL] [Abstract][Full Text] [Related]  

  • 53. Layered nested Markov chain Monte Carlo.
    Jackson NE; Webb MA; de Pablo JJ
    J Chem Phys; 2018 Aug; 149(7):072326. PubMed ID: 30134725
    [TBL] [Abstract][Full Text] [Related]  

  • 54. Accessible Molecular System Creator: Building Molecular Configurations Based on the Inaccessible Molecular Volume and Accessible Molecular Surface via Static Monte Carlo Sampling.
    Boulougouris GC
    J Phys Chem B; 2023 Nov; 127(44):9520-9531. PubMed ID: 37883744
    [TBL] [Abstract][Full Text] [Related]  

  • 55. Free energy and kinetic rate calculation via non-equilibrium molecular simulation: application to biomolecules.
    Iida S; Tomoshi K
    Biophys Rev; 2022 Dec; 14(6):1303-1314. PubMed ID: 36659997
    [TBL] [Abstract][Full Text] [Related]  

  • 56. A Novel Hamiltonian Replica Exchange MD Protocol to Enhance Protein Conformational Space Sampling.
    Affentranger R; Tavernelli I; Di Iorio EE
    J Chem Theory Comput; 2006 Mar; 2(2):217-28. PubMed ID: 26626508
    [TBL] [Abstract][Full Text] [Related]  

  • 57. Designing generalized statistical ensembles for numerical simulations of biopolymers.
    La Penna G; Morante S; Perico A; Rossi GC
    J Chem Phys; 2004 Dec; 121(21):10725-41. PubMed ID: 15549958
    [TBL] [Abstract][Full Text] [Related]  

  • 58. Efficient Round-Trip Time Optimization for Replica-Exchange Enveloping Distribution Sampling (RE-EDS).
    Sidler D; Cristòfol-Clough M; Riniker S
    J Chem Theory Comput; 2017 Jun; 13(6):3020-3030. PubMed ID: 28510459
    [TBL] [Abstract][Full Text] [Related]  

  • 59. Replica state exchange metadynamics for improving the convergence of free energy estimates.
    Galvelis R; Sugita Y
    J Comput Chem; 2015 Jul; 36(19):1446-55. PubMed ID: 25990969
    [TBL] [Abstract][Full Text] [Related]  

  • 60. A separable shadow Hamiltonian hybrid Monte Carlo method.
    Sweet CR; Hampton SS; Skeel RD; Izaguirre JA
    J Chem Phys; 2009 Nov; 131(17):174106. PubMed ID: 19894997
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 13.