These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
391 related articles for article (PubMed ID: 29323881)
21. Building Markov State Models for Periodically Driven Non-Equilibrium Systems. Wang H; Schütte C J Chem Theory Comput; 2015 Apr; 11(4):1819-31. PubMed ID: 26889513 [TBL] [Abstract][Full Text] [Related]
23. Accurate Estimation of Protein Folding and Unfolding Times: Beyond Markov State Models. Suárez E; Adelman JL; Zuckerman DM J Chem Theory Comput; 2016 Aug; 12(8):3473-81. PubMed ID: 27340835 [TBL] [Abstract][Full Text] [Related]
24. What Markov State Models Can and Cannot Do: Correlation versus Path-Based Observables in Protein-Folding Models. Suárez E; Wiewiora RP; Wehmeyer C; Noé F; Chodera JD; Zuckerman DM J Chem Theory Comput; 2021 May; 17(5):3119-3133. PubMed ID: 33904312 [TBL] [Abstract][Full Text] [Related]
25. A new class of enhanced kinetic sampling methods for building Markov state models. Bhoutekar A; Ghosh S; Bhattacharya S; Chatterjee A J Chem Phys; 2017 Oct; 147(15):152702. PubMed ID: 29055344 [TBL] [Abstract][Full Text] [Related]
26. Simulating the T-jump-triggered unfolding dynamics of trpzip2 peptide and its time-resolved IR and two-dimensional IR signals using the Markov state model approach. Zhuang W; Cui RZ; Silva DA; Huang X J Phys Chem B; 2011 May; 115(18):5415-24. PubMed ID: 21388153 [TBL] [Abstract][Full Text] [Related]
27. VAMPnets for deep learning of molecular kinetics. Mardt A; Pasquali L; Wu H; Noé F Nat Commun; 2018 Jan; 9(1):5. PubMed ID: 29295994 [TBL] [Abstract][Full Text] [Related]
28. A tutorial on building markov state models with MSMBuilder and coarse-graining them with BACE. Bowman GR Methods Mol Biol; 2014; 1084():141-58. PubMed ID: 24061920 [TBL] [Abstract][Full Text] [Related]
29. Potential-based dynamical reweighting for Markov state models of protein dynamics. Weber JK; Pande VS J Chem Theory Comput; 2015 Jun; 11(6):2412-20. PubMed ID: 26575541 [TBL] [Abstract][Full Text] [Related]
30. Using Markov state models to study self-assembly. Perkett MR; Hagan MF J Chem Phys; 2014 Jun; 140(21):214101. PubMed ID: 24907984 [TBL] [Abstract][Full Text] [Related]
31. On the advantages of exploiting memory in Markov state models for biomolecular dynamics. Cao S; Montoya-Castillo A; Wang W; Markland TE; Huang X J Chem Phys; 2020 Jul; 153(1):014105. PubMed ID: 32640825 [TBL] [Abstract][Full Text] [Related]
32. Simulating the peptide folding kinetic related spectra based on the Markov State Model. Song J; Zhuang W Adv Exp Med Biol; 2014; 805():199-220. PubMed ID: 24446363 [TBL] [Abstract][Full Text] [Related]
34. Constructing Kinetic Network Models to Elucidate Mechanisms of Functional Conformational Changes of Enzymes and Their Recognition with Ligands. Zhang L; Jiang H; Sheong FK; Pardo-Avila F; Cheung PP; Huang X Methods Enzymol; 2016; 578():343-71. PubMed ID: 27497174 [TBL] [Abstract][Full Text] [Related]
35. Frontiers in molecular dynamics simulations of DNA. Pérez A; Luque FJ; Orozco M Acc Chem Res; 2012 Feb; 45(2):196-205. PubMed ID: 21830782 [TBL] [Abstract][Full Text] [Related]
36. MasterMSM: A Package for Constructing Master Equation Models of Molecular Dynamics. de Sancho D; Aguirre A J Chem Inf Model; 2019 Sep; 59(9):3625-3629. PubMed ID: 31423789 [TBL] [Abstract][Full Text] [Related]
37. Combining experimental and simulation data of molecular processes via augmented Markov models. Olsson S; Wu H; Paul F; Clementi C; Noé F Proc Natl Acad Sci U S A; 2017 Aug; 114(31):8265-8270. PubMed ID: 28716931 [TBL] [Abstract][Full Text] [Related]
38. Information Bottleneck Approach for Markov Model Construction. Wang D; Qiu Y; Beyerle ER; Huang X; Tiwary P J Chem Theory Comput; 2024 Jun; 20(12):5352-5367. PubMed ID: 38859575 [TBL] [Abstract][Full Text] [Related]
39. Hybrid Cascade-Type Molecular Dynamics with a Markov State Model for Efficient Free Energy Calculations. Harada R; Shigeta Y J Chem Theory Comput; 2019 Jan; 15(1):680-687. PubMed ID: 30468705 [TBL] [Abstract][Full Text] [Related]
40. Markov models of molecular kinetics: generation and validation. Prinz JH; Wu H; Sarich M; Keller B; Senne M; Held M; Chodera JD; Schütte C; Noé F J Chem Phys; 2011 May; 134(17):174105. PubMed ID: 21548671 [TBL] [Abstract][Full Text] [Related] [Previous] [Next] [New Search]