BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

829 related articles for article (PubMed ID: 29335486)

  • 1. High-resolution TADs reveal DNA sequences underlying genome organization in flies.
    Ramírez F; Bhardwaj V; Arrigoni L; Lam KC; Grüning BA; Villaveces J; Habermann B; Akhtar A; Manke T
    Nat Commun; 2018 Jan; 9(1):189. PubMed ID: 29335486
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Sub-kb Hi-C in D. melanogaster reveals conserved characteristics of TADs between insect and mammalian cells.
    Wang Q; Sun Q; Czajkowsky DM; Shao Z
    Nat Commun; 2018 Jan; 9(1):188. PubMed ID: 29335463
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Chromatin architecture reorganization during neuronal cell differentiation in
    Chathoth KT; Zabet NR
    Genome Res; 2019 Apr; 29(4):613-625. PubMed ID: 30709849
    [TBL] [Abstract][Full Text] [Related]  

  • 4. 4C-seq characterization of Drosophila BEAF binding regions provides evidence for highly variable long-distance interactions between active chromatin.
    Shrestha S; Oh DH; McKowen JK; Dassanayake M; Hart CM
    PLoS One; 2018; 13(9):e0203843. PubMed ID: 30248133
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Quantitative differences in TAD border strength underly the TAD hierarchy in Drosophila chromosomes.
    Luzhin AV; Flyamer IM; Khrameeva EE; Ulianov SV; Razin SV; Gavrilov AA
    J Cell Biochem; 2019 Mar; 120(3):4494-4503. PubMed ID: 30260021
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Active chromatin and transcription play a key role in chromosome partitioning into topologically associating domains.
    Ulianov SV; Khrameeva EE; Gavrilov AA; Flyamer IM; Kos P; Mikhaleva EA; Penin AA; Logacheva MD; Imakaev MV; Chertovich A; Gelfand MS; Shevelyov YY; Razin SV
    Genome Res; 2016 Jan; 26(1):70-84. PubMed ID: 26518482
    [TBL] [Abstract][Full Text] [Related]  

  • 7. CTCF, BEAF-32, and CP190 are not required for the establishment of TADs in early
    Cavalheiro GR; Girardot C; Viales RR; Pollex T; Cao TBN; Lacour P; Feng S; Rabinowitz A; Furlong EEM
    Sci Adv; 2023 Feb; 9(5):eade1085. PubMed ID: 36735786
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Overlapping but Distinct Sequences Play Roles in the Insulator and Promoter Activities of the
    Maharjan M; McKowen JK; Hart CM
    Genetics; 2020 Aug; 215(4):1003-1012. PubMed ID: 32554599
    [TBL] [Abstract][Full Text] [Related]  

  • 9. M1BP cooperates with CP190 to activate transcription at TAD borders and promote chromatin insulator activity.
    Bag I; Chen S; Rosin LF; Chen Y; Liu CY; Yu GY; Lei EP
    Nat Commun; 2021 Jul; 12(1):4170. PubMed ID: 34234130
    [TBL] [Abstract][Full Text] [Related]  

  • 10. 3D genome evolution and reorganization in the Drosophila melanogaster species group.
    Torosin NS; Anand A; Golla TR; Cao W; Ellison CE
    PLoS Genet; 2020 Dec; 16(12):e1009229. PubMed ID: 33284803
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Drosophila CTCF tandemly aligns with other insulator proteins at the borders of H3K27me3 domains.
    Van Bortle K; Ramos E; Takenaka N; Yang J; Wahi JE; Corces VG
    Genome Res; 2012 Nov; 22(11):2176-87. PubMed ID: 22722341
    [TBL] [Abstract][Full Text] [Related]  

  • 12. The role of insulators and transcription in 3D chromatin organization of flies.
    Chathoth KT; Mikheeva LA; Crevel G; Wolfe JC; Hunter I; Beckett-Doyle S; Cotterill S; Dai H; Harrison A; Zabet NR
    Genome Res; 2022 Apr; 32(4):682-698. PubMed ID: 35354608
    [TBL] [Abstract][Full Text] [Related]  

  • 13. StackTADB: a stacking-based ensemble learning model for predicting the boundaries of topologically associating domains (TADs) accurately in fruit flies.
    Wu H; Zhang P; Ai Z; Wei L; Zhang H; Yang F; Cui L
    Brief Bioinform; 2022 Mar; 23(2):. PubMed ID: 35181793
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Genome-wide mapping of boundary element-associated factor (BEAF) binding sites in Drosophila melanogaster links BEAF to transcription.
    Jiang N; Emberly E; Cuvier O; Hart CM
    Mol Cell Biol; 2009 Jul; 29(13):3556-68. PubMed ID: 19380483
    [TBL] [Abstract][Full Text] [Related]  

  • 15. 5C analysis of the Epidermal Differentiation Complex locus reveals distinct chromatin interaction networks between gene-rich and gene-poor TADs in skin epithelial cells.
    Poterlowicz K; Yarker JL; Malashchuk I; Lajoie BR; Mardaryev AN; Gdula MR; Sharov AA; Kohwi-Shigematsu T; Botchkarev VA; Fessing MY
    PLoS Genet; 2017 Sep; 13(9):e1006966. PubMed ID: 28863138
    [TBL] [Abstract][Full Text] [Related]  

  • 16. In situ dissection of domain boundaries affect genome topology and gene transcription in Drosophila.
    Arzate-Mejía RG; Josué Cerecedo-Castillo A; Guerrero G; Furlan-Magaril M; Recillas-Targa F
    Nat Commun; 2020 Feb; 11(1):894. PubMed ID: 32060283
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Chromatin Architecture Emerges during Zygotic Genome Activation Independent of Transcription.
    Hug CB; Grimaldi AG; Kruse K; Vaquerizas JM
    Cell; 2017 Apr; 169(2):216-228.e19. PubMed ID: 28388407
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Chromatin Architecture in the Fly: Living without CTCF/Cohesin Loop Extrusion?: Alternating Chromatin States Provide a Basis for Domain Architecture in Drosophila.
    Matthews NE; White R
    Bioessays; 2019 Sep; 41(9):e1900048. PubMed ID: 31264253
    [TBL] [Abstract][Full Text] [Related]  

  • 19. A BEAF dependent chromatin domain boundary separates myoglianin and eyeless genes of Drosophila melanogaster.
    Sultana H; Verma S; Mishra RK
    Nucleic Acids Res; 2011 May; 39(9):3543-57. PubMed ID: 21247873
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Constitutively bound CTCF sites maintain 3D chromatin architecture and long-range epigenetically regulated domains.
    Khoury A; Achinger-Kawecka J; Bert SA; Smith GC; French HJ; Luu PL; Peters TJ; Du Q; Parry AJ; Valdes-Mora F; Taberlay PC; Stirzaker C; Statham AL; Clark SJ
    Nat Commun; 2020 Jan; 11(1):54. PubMed ID: 31911579
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 42.