263 related articles for article (PubMed ID: 29342233)
1. QuantumClone: clonal assessment of functional mutations in cancer based on a genotype-aware method for clonal reconstruction.
Deveau P; Colmet Daage L; Oldridge D; Bernard V; Bellini A; Chicard M; Clement N; Lapouble E; Combaret V; Boland A; Meyer V; Deleuze JF; Janoueix-Lerosey I; Barillot E; Delattre O; Maris JM; Schleiermacher G; Boeva V
Bioinformatics; 2018 Jun; 34(11):1808-1816. PubMed ID: 29342233
[TBL] [Abstract][Full Text] [Related]
2. SECEDO: SNV-based subclone detection using ultra-low coverage single-cell DNA sequencing.
Rozhoňová H; Danciu D; Stark S; Rätsch G; Kahles A; Lehmann KV
Bioinformatics; 2022 Sep; 38(18):4293-4300. PubMed ID: 35900151
[TBL] [Abstract][Full Text] [Related]
3. PhyloWGS: reconstructing subclonal composition and evolution from whole-genome sequencing of tumors.
Deshwar AG; Vembu S; Yung CK; Jang GH; Stein L; Morris Q
Genome Biol; 2015 Feb; 16(1):35. PubMed ID: 25786235
[TBL] [Abstract][Full Text] [Related]
4. Inferring clonal heterogeneity in cancer using SNP arrays and whole genome sequencing.
Zucker MR; Abruzzo LV; Herling CD; Barron LL; Keating MJ; Abrams ZB; Heerema N; Coombes KR
Bioinformatics; 2019 Sep; 35(17):2924-2931. PubMed ID: 30689715
[TBL] [Abstract][Full Text] [Related]
5. Accurity: accurate tumor purity and ploidy inference from tumor-normal WGS data by jointly modelling somatic copy number alterations and heterozygous germline single-nucleotide-variants.
Luo Z; Fan X; Su Y; Huang YS
Bioinformatics; 2018 Jun; 34(12):2004-2011. PubMed ID: 29385401
[TBL] [Abstract][Full Text] [Related]
6. SiNVICT: ultra-sensitive detection of single nucleotide variants and indels in circulating tumour DNA.
Kockan C; Hach F; Sarrafi I; Bell RH; McConeghy B; Beja K; Haegert A; Wyatt AW; Volik SV; Chi KN; Collins CC; Sahinalp SC
Bioinformatics; 2017 Jan; 33(1):26-34. PubMed ID: 27531099
[TBL] [Abstract][Full Text] [Related]
7. Whole-Exome Sequencing of Cell-Free DNA Reveals Temporo-spatial Heterogeneity and Identifies Treatment-Resistant Clones in Neuroblastoma.
Chicard M; Colmet-Daage L; Clement N; Danzon A; Bohec M; Bernard V; Baulande S; Bellini A; Deveau P; Pierron G; Lapouble E; Janoueix-Lerosey I; Peuchmaur M; Corradini N; Defachelles AS; Valteau-Couanet D; Michon J; Combaret V; Delattre O; Schleiermacher G
Clin Cancer Res; 2018 Feb; 24(4):939-949. PubMed ID: 29191970
[No Abstract] [Full Text] [Related]
8. Reconstructing tumor clonal lineage trees incorporating single-nucleotide variants, copy number alterations and structural variations.
Fu X; Lei H; Tao Y; Schwartz R
Bioinformatics; 2022 Jun; 38(Suppl 1):i125-i133. PubMed ID: 35758777
[TBL] [Abstract][Full Text] [Related]
9. Clonal reconstruction from time course genomic sequencing data.
Ismail WM; Tang H
BMC Genomics; 2019 Dec; 20(Suppl 12):1002. PubMed ID: 31888455
[TBL] [Abstract][Full Text] [Related]
10. Assessing intratumor heterogeneity and tracking longitudinal and spatial clonal evolutionary history by next-generation sequencing.
Jiang Y; Qiu Y; Minn AJ; Zhang NR
Proc Natl Acad Sci U S A; 2016 Sep; 113(37):E5528-37. PubMed ID: 27573852
[TBL] [Abstract][Full Text] [Related]
11. Reconstruction of clonal trees and tumor composition from multi-sample sequencing data.
El-Kebir M; Oesper L; Acheson-Field H; Raphael BJ
Bioinformatics; 2015 Jun; 31(12):i62-70. PubMed ID: 26072510
[TBL] [Abstract][Full Text] [Related]
12. Identifying tumor clones in sparse single-cell mutation data.
Myers MA; Zaccaria S; Raphael BJ
Bioinformatics; 2020 Jul; 36(Suppl_1):i186-i193. PubMed ID: 32657385
[TBL] [Abstract][Full Text] [Related]
13. TPES: tumor purity estimation from SNVs.
Locallo A; Prandi D; Fedrizzi T; Demichelis F
Bioinformatics; 2019 Nov; 35(21):4433-4435. PubMed ID: 31099386
[TBL] [Abstract][Full Text] [Related]
14. Clonal evolution of acute myeloid leukemia highlighted by latest genome sequencing studies.
Zhang X; Lv D; Zhang Y; Liu Q; Li Z
Oncotarget; 2016 Sep; 7(36):58586-58594. PubMed ID: 27474172
[TBL] [Abstract][Full Text] [Related]
15. SV-Bay: structural variant detection in cancer genomes using a Bayesian approach with correction for GC-content and read mappability.
Iakovishina D; Janoueix-Lerosey I; Barillot E; Regnier M; Boeva V
Bioinformatics; 2016 Apr; 32(7):984-92. PubMed ID: 26740523
[TBL] [Abstract][Full Text] [Related]
16. Using genotype array data to compare multi- and single-sample variant calls and improve variant call sets from deep coverage whole-genome sequencing data.
Shringarpure SS; Mathias RA; Hernandez RD; O'Connor TD; Szpiech ZA; Torres R; De La Vega FM; Bustamante CD; Barnes KC; Taub MA;
Bioinformatics; 2017 Apr; 33(8):1147-1153. PubMed ID: 28035032
[TBL] [Abstract][Full Text] [Related]
17. SuperFreq: Integrated mutation detection and clonal tracking in cancer.
Flensburg C; Sargeant T; Oshlack A; Majewski IJ
PLoS Comput Biol; 2020 Feb; 16(2):e1007603. PubMed ID: 32053599
[TBL] [Abstract][Full Text] [Related]
18. Reconstructing Clonal Evolution-A Systematic Evaluation of Current Bioinformatics Approaches.
Sandmann S; Richter S; Jiang X; Varghese J
Int J Environ Res Public Health; 2023 Mar; 20(6):. PubMed ID: 36982036
[TBL] [Abstract][Full Text] [Related]
19. Two-point-NGS analysis of cancer genes in cell-free DNA of metastatic cancer patients.
Palmieri M; Baldassarri M; Fava F; Fabbiani A; Gelli E; Tita R; Torre P; Petrioli R; Hadijstilianou T; Galimberti D; Cinotti E; Bengala C; Mandalà M; Piu P; Miano ST; Martellucci I; Vannini A; Pinto AM; Mencarelli MA; Marsili S; Renieri A; Frullanti E
Cancer Med; 2020 Mar; 9(6):2052-2061. PubMed ID: 31991072
[TBL] [Abstract][Full Text] [Related]
20. SCONCE: a method for profiling copy number alterations in cancer evolution using single-cell whole genome sequencing.
Hui S; Nielsen R
Bioinformatics; 2022 Mar; 38(7):1801-1808. PubMed ID: 35080614
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
