343 related articles for article (PubMed ID: 29346625)
1. Complete genomic and transcriptional landscape analysis using third-generation sequencing: a case study of Saccharomyces cerevisiae CEN.PK113-7D.
Jenjaroenpun P; Wongsurawat T; Pereira R; Patumcharoenpol P; Ussery DW; Nielsen J; Nookaew I
Nucleic Acids Res; 2018 Apr; 46(7):e38. PubMed ID: 29346625
[TBL] [Abstract][Full Text] [Related]
2. Nanopore sequencing enables near-complete de novo assembly of Saccharomyces cerevisiae reference strain CEN.PK113-7D.
Salazar AN; Gorter de Vries AR; van den Broek M; Wijsman M; de la Torre Cortés P; Brickwedde A; Brouwers N; Daran JG; Abeel T
FEMS Yeast Res; 2017 Nov; 17(7):. PubMed ID: 28961779
[TBL] [Abstract][Full Text] [Related]
3. Whole genome sequencing of Saccharomyces cerevisiae: from genotype to phenotype for improved metabolic engineering applications.
Otero JM; Vongsangnak W; Asadollahi MA; Olivares-Hernandes R; Maury J; Farinelli L; Barlocher L; Osterås M; Schalk M; Clark A; Nielsen J
BMC Genomics; 2010 Dec; 11():723. PubMed ID: 21176163
[TBL] [Abstract][Full Text] [Related]
4. De novo sequencing, assembly and analysis of the genome of the laboratory strain Saccharomyces cerevisiae CEN.PK113-7D, a model for modern industrial biotechnology.
Nijkamp JF; van den Broek M; Datema E; de Kok S; Bosman L; Luttik MA; Daran-Lapujade P; Vongsangnak W; Nielsen J; Heijne WH; Klaassen P; Paddon CJ; Platt D; Kötter P; van Ham RC; Reinders MJ; Pronk JT; de Ridder D; Daran JM
Microb Cell Fact; 2012 Mar; 11():36. PubMed ID: 22448915
[TBL] [Abstract][Full Text] [Related]
5. Comparative genotyping of the Saccharomyces cerevisiae laboratory strains S288C and CEN.PK113-7D using oligonucleotide microarrays.
Daran-Lapujade P; Daran JM; Kötter P; Petit T; Piper MD; Pronk JT
FEMS Yeast Res; 2003 Dec; 4(3):259-69. PubMed ID: 14654430
[TBL] [Abstract][Full Text] [Related]
6. De novo yeast genome assemblies from MinION, PacBio and MiSeq platforms.
Giordano F; Aigrain L; Quail MA; Coupland P; Bonfield JK; Davies RM; Tischler G; Jackson DK; Keane TM; Li J; Yue JX; Liti G; Durbin R; Ning Z
Sci Rep; 2017 Jun; 7(1):3935. PubMed ID: 28638050
[TBL] [Abstract][Full Text] [Related]
7. Oxford Nanopore MinION Sequencing and Genome Assembly.
Lu H; Giordano F; Ning Z
Genomics Proteomics Bioinformatics; 2016 Oct; 14(5):265-279. PubMed ID: 27646134
[TBL] [Abstract][Full Text] [Related]
8. Evaluation of strategies for the assembly of diverse bacterial genomes using MinION long-read sequencing.
Goldstein S; Beka L; Graf J; Klassen JL
BMC Genomics; 2019 Jan; 20(1):23. PubMed ID: 30626323
[TBL] [Abstract][Full Text] [Related]
9. Experimental annotation of the human pathogen Candida albicans coding and noncoding transcribed regions using high-resolution tiling arrays.
Sellam A; Hogues H; Askew C; Tebbji F; van Het Hoog M; Lavoie H; Kumamoto CA; Whiteway M; Nantel A
Genome Biol; 2010; 11(7):R71. PubMed ID: 20618945
[TBL] [Abstract][Full Text] [Related]
10. de novo assembly and population genomic survey of natural yeast isolates with the Oxford Nanopore MinION sequencer.
Istace B; Friedrich A; d'Agata L; Faye S; Payen E; Beluche O; Caradec C; Davidas S; Cruaud C; Liti G; Lemainque A; Engelen S; Wincker P; Schacherer J; Aury JM
Gigascience; 2017 Feb; 6(2):1-13. PubMed ID: 28369459
[TBL] [Abstract][Full Text] [Related]
11. Comparison of the two up-to-date sequencing technologies for genome assembly: HiFi reads of Pacific Biosciences Sequel II system and ultralong reads of Oxford Nanopore.
Lang D; Zhang S; Ren P; Liang F; Sun Z; Meng G; Tan Y; Li X; Lai Q; Han L; Wang D; Hu F; Wang W; Liu S
Gigascience; 2020 Dec; 9(12):. PubMed ID: 33319909
[TBL] [Abstract][Full Text] [Related]
12. The first genome assembly of fungal pathogen Pyrenophora tritici-repentis race 1 isolate using Oxford Nanopore MinION sequencing.
Moolhuijzen P; See PT; Moffat CS
BMC Res Notes; 2021 Aug; 14(1):334. PubMed ID: 34454585
[TBL] [Abstract][Full Text] [Related]
13. Genome Sequencing.
Yoshinaga Y; Daum C; He G; O'Malley R
Methods Mol Biol; 2018; 1775():37-52. PubMed ID: 29876807
[TBL] [Abstract][Full Text] [Related]
14. Comparison of De Novo Assembly Strategies for Bacterial Genomes.
Zhang P; Jiang D; Wang Y; Yao X; Luo Y; Yang Z
Int J Mol Sci; 2021 Jul; 22(14):. PubMed ID: 34299288
[TBL] [Abstract][Full Text] [Related]
15. Comparison of long-read sequencing technologies in the hybrid assembly of complex bacterial genomes.
De Maio N; Shaw LP; Hubbard A; George S; Sanderson ND; Swann J; Wick R; AbuOun M; Stubberfield E; Hoosdally SJ; Crook DW; Peto TEA; Sheppard AE; Bailey MJ; Read DS; Anjum MF; Walker AS; Stoesser N; On Behalf Of The Rehab Consortium
Microb Genom; 2019 Sep; 5(9):. PubMed ID: 31483244
[TBL] [Abstract][Full Text] [Related]
16. Benchmarking of long-read sequencing, assemblers and polishers for yeast genome.
Zhang X; Liu CG; Yang SH; Wang X; Bai FW; Wang Z
Brief Bioinform; 2022 May; 23(3):. PubMed ID: 35511110
[TBL] [Abstract][Full Text] [Related]
17. Are we there yet? Benchmarking low-coverage nanopore long-read sequencing for the assembling of mitochondrial genomes using the vulnerable silky shark Carcharhinus falciformis.
Baeza JA; García-De León FJ
BMC Genomics; 2022 Apr; 23(1):320. PubMed ID: 35459089
[TBL] [Abstract][Full Text] [Related]
18. Highly parallel direct RNA sequencing on an array of nanopores.
Garalde DR; Snell EA; Jachimowicz D; Sipos B; Lloyd JH; Bruce M; Pantic N; Admassu T; James P; Warland A; Jordan M; Ciccone J; Serra S; Keenan J; Martin S; McNeill L; Wallace EJ; Jayasinghe L; Wright C; Blasco J; Young S; Brocklebank D; Juul S; Clarke J; Heron AJ; Turner DJ
Nat Methods; 2018 Mar; 15(3):201-206. PubMed ID: 29334379
[TBL] [Abstract][Full Text] [Related]
19. Oxford Nanopore sequencing, hybrid error correction, and de novo assembly of a eukaryotic genome.
Goodwin S; Gurtowski J; Ethe-Sayers S; Deshpande P; Schatz MC; McCombie WR
Genome Res; 2015 Nov; 25(11):1750-6. PubMed ID: 26447147
[TBL] [Abstract][Full Text] [Related]
20. ONT-Based Alternative Assemblies Impact on the Annotations of Unique versus Repetitive Features in the Genome of a Romanian Strain of
Bologa AM; Stoica I; Ratiu AC; Constantin ND; Ecovoiu AA
Int J Mol Sci; 2022 Nov; 23(23):. PubMed ID: 36499217
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
