These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

322 related articles for article (PubMed ID: 29360928)

  • 1. APAtrap: identification and quantification of alternative polyadenylation sites from RNA-seq data.
    Ye C; Long Y; Ji G; Li QQ; Wu X
    Bioinformatics; 2018 Jun; 34(11):1841-1849. PubMed ID: 29360928
    [TBL] [Abstract][Full Text] [Related]  

  • 2. APA-Scan: detection and visualization of 3'-UTR alternative polyadenylation with RNA-seq and 3'-end-seq data.
    Fahmi NA; Ahmed KT; Chang JW; Nassereddeen H; Fan D; Yong J; Zhang W
    BMC Bioinformatics; 2022 Sep; 23(Suppl 3):396. PubMed ID: 36171568
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Benchmarking sequencing methods and tools that facilitate the study of alternative polyadenylation.
    Shah A; Mittleman BE; Gilad Y; Li YI
    Genome Biol; 2021 Oct; 22(1):291. PubMed ID: 34649612
    [TBL] [Abstract][Full Text] [Related]  

  • 4. scAPAtrap: identification and quantification of alternative polyadenylation sites from single-cell RNA-seq data.
    Wu X; Liu T; Ye C; Ye W; Ji G
    Brief Bioinform; 2021 Jul; 22(4):. PubMed ID: 33142319
    [TBL] [Abstract][Full Text] [Related]  

  • 5. movAPA: modeling and visualization of dynamics of alternative polyadenylation across biological samples.
    Ye W; Liu T; Fu H; Ye C; Ji G; Wu X
    Bioinformatics; 2021 Aug; 37(16):2470-2472. PubMed ID: 33258917
    [TBL] [Abstract][Full Text] [Related]  

  • 6. TAPAS: tool for alternative polyadenylation site analysis.
    Arefeen A; Liu J; Xiao X; Jiang T
    Bioinformatics; 2018 Aug; 34(15):2521-2529. PubMed ID: 30052912
    [TBL] [Abstract][Full Text] [Related]  

  • 7. A survey on identification and quantification of alternative polyadenylation sites from RNA-seq data.
    Chen M; Ji G; Fu H; Lin Q; Ye C; Ye W; Su Y; Wu X
    Brief Bioinform; 2020 Jul; 21(4):1261-1276. PubMed ID: 31267126
    [TBL] [Abstract][Full Text] [Related]  

  • 8. scDAPA: detection and visualization of dynamic alternative polyadenylation from single cell RNA-seq data.
    Ye C; Zhou Q; Wu X; Yu C; Ji G; Saban DR; Li QQ
    Bioinformatics; 2020 Feb; 36(4):1262-1264. PubMed ID: 31557285
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Accurate transcriptome-wide identification and quantification of alternative polyadenylation from RNA-seq data with APAIQ.
    Long Y; Zhang B; Tian S; Chan JJ; Zhou J; Li Z; Li Y; An Z; Liao X; Wang Y; Sun S; Xu Y; Tay Y; Chen W; Gao X
    Genome Res; 2023 Apr; 33(4):644-657. PubMed ID: 37117035
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Genome-wide alternative polyadenylation dynamics in response to biotic and abiotic stresses in rice.
    Ye C; Zhou Q; Wu X; Ji G; Li QQ
    Ecotoxicol Environ Saf; 2019 Nov; 183():109485. PubMed ID: 31376807
    [TBL] [Abstract][Full Text] [Related]  

  • 11. TSAPA: identification of tissue-specific alternative polyadenylation sites in plants.
    Ji G; Chen M; Ye W; Zhu S; Ye C; Su Y; Peng H; Wu X
    Bioinformatics; 2018 Jun; 34(12):2123-2125. PubMed ID: 29385403
    [TBL] [Abstract][Full Text] [Related]  

  • 12. scAPAmod: Profiling Alternative Polyadenylation Modalities in Single Cells from Single-Cell RNA-Seq Data.
    Qian L; Fu H; Mou Y; Lin W; Ye L; Ji G
    Int J Mol Sci; 2022 Jul; 23(15):. PubMed ID: 35897701
    [TBL] [Abstract][Full Text] [Related]  

  • 13. APAlyzer: a bioinformatics package for analysis of alternative polyadenylation isoforms.
    Wang R; Tian B
    Bioinformatics; 2020 Jun; 36(12):3907-3909. PubMed ID: 32321166
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Alternative polyadenylation analysis in animals and plants: newly developed strategies for profiling, processing and validation.
    Zhang Y; Carrion SA; Zhang Y; Zhang X; Zinski AL; Michal JJ; Jiang Z
    Int J Biol Sci; 2018; 14(12):1709-1714. PubMed ID: 30416385
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Poly(A)-ClickSeq: click-chemistry for next-generation 3΄-end sequencing without RNA enrichment or fragmentation.
    Routh A; Ji P; Jaworski E; Xia Z; Li W; Wagner EJ
    Nucleic Acids Res; 2017 Jul; 45(12):e112. PubMed ID: 28449108
    [TBL] [Abstract][Full Text] [Related]  

  • 16. QPAT-seq, a rapid and deduplicatable method for quantification of poly(A) site usages.
    Lin J; Ye C; Li QQ
    Methods Enzymol; 2021; 655():73-83. PubMed ID: 34183134
    [TBL] [Abstract][Full Text] [Related]  

  • 17. PlantAPA: A Portal for Visualization and Analysis of Alternative Polyadenylation in Plants.
    Wu X; Zhang Y; Li QQ
    Front Plant Sci; 2016; 7():889. PubMed ID: 27446120
    [TBL] [Abstract][Full Text] [Related]  

  • 18. PAT-Seq: A Method for Simultaneous Quantitation of Gene Expression, Poly(A)-Site Selection and Poly(A)-Length Distribution in Yeast Transcriptomes.
    Swaminathan A; Harrison PF; Preiss T; Beilharz TH
    Methods Mol Biol; 2019; 2049():141-164. PubMed ID: 31602610
    [TBL] [Abstract][Full Text] [Related]  

  • 19. APASdb: a database describing alternative poly(A) sites and selection of heterogeneous cleavage sites downstream of poly(A) signals.
    You L; Wu J; Feng Y; Fu Y; Guo Y; Long L; Zhang H; Luan Y; Tian P; Chen L; Huang G; Huang S; Li Y; Li J; Chen C; Zhang Y; Chen S; Xu A
    Nucleic Acids Res; 2015 Jan; 43(Database issue):D59-67. PubMed ID: 25378337
    [TBL] [Abstract][Full Text] [Related]  

  • 20. mountainClimber Identifies Alternative Transcription Start and Polyadenylation Sites in RNA-Seq.
    Cass AA; Xiao X
    Cell Syst; 2019 Oct; 9(4):393-400.e6. PubMed ID: 31542416
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 17.