BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

170 related articles for article (PubMed ID: 29360936)

  • 1. Haystack: systematic analysis of the variation of epigenetic states and cell-type specific regulatory elements.
    Pinello L; Farouni R; Yuan GC
    Bioinformatics; 2018 Jun; 34(11):1930-1933. PubMed ID: 29360936
    [TBL] [Abstract][Full Text] [Related]  

  • 2. EpiCompare: an online tool to define and explore genomic regions with tissue or cell type-specific epigenomic features.
    He Y; Wang T
    Bioinformatics; 2017 Oct; 33(20):3268-3275. PubMed ID: 28605501
    [TBL] [Abstract][Full Text] [Related]  

  • 3. GREGOR: evaluating global enrichment of trait-associated variants in epigenomic features using a systematic, data-driven approach.
    Schmidt EM; Zhang J; Zhou W; Chen J; Mohlke KL; Chen YE; Willer CJ
    Bioinformatics; 2015 Aug; 31(16):2601-6. PubMed ID: 25886982
    [TBL] [Abstract][Full Text] [Related]  

  • 4. S3V2-IDEAS: a package for normalizing, denoising and integrating epigenomic datasets across different cell types.
    Xiang G; Giardine BM; Mahony S; Zhang Y; Hardison RC
    Bioinformatics; 2021 Sep; 37(18):3011-3013. PubMed ID: 33681991
    [TBL] [Abstract][Full Text] [Related]  

  • 5. diffloop: a computational framework for identifying and analyzing differential DNA loops from sequencing data.
    Lareau CA; Aryee MJ
    Bioinformatics; 2018 Feb; 34(4):672-674. PubMed ID: 29028898
    [TBL] [Abstract][Full Text] [Related]  

  • 6. SNPhood: investigate, quantify and visualise the epigenomic neighbourhood of SNPs using NGS data.
    Arnold C; Bhat P; Zaugg JB
    Bioinformatics; 2016 Aug; 32(15):2359-60. PubMed ID: 27153574
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Chromatin accessibility prediction via a hybrid deep convolutional neural network.
    Liu Q; Xia F; Yin Q; Jiang R
    Bioinformatics; 2018 Mar; 34(5):732-738. PubMed ID: 29069282
    [TBL] [Abstract][Full Text] [Related]  

  • 8. C3D: a tool to predict 3D genomic interactions between cis-regulatory elements.
    Mehdi T; Bailey SD; Guilhamon P; Lupien M
    Bioinformatics; 2019 Mar; 35(5):877-879. PubMed ID: 30816925
    [TBL] [Abstract][Full Text] [Related]  

  • 9. ALTRE: workflow for defining ALTered Regulatory Elements using chromatin accessibility data.
    Baskin E; Farouni R; Mathé EA
    Bioinformatics; 2017 Mar; 33(5):740-742. PubMed ID: 28011773
    [TBL] [Abstract][Full Text] [Related]  

  • 10. ALEA: a toolbox for allele-specific epigenomics analysis.
    Younesy H; Möller T; Heravi-Moussavi A; Cheng JB; Costello JF; Lorincz MC; Karimi MM; Jones SJ
    Bioinformatics; 2014 Apr; 30(8):1172-1174. PubMed ID: 24371156
    [TBL] [Abstract][Full Text] [Related]  

  • 11. LOLA: enrichment analysis for genomic region sets and regulatory elements in R and Bioconductor.
    Sheffield NC; Bock C
    Bioinformatics; 2016 Feb; 32(4):587-9. PubMed ID: 26508757
    [TBL] [Abstract][Full Text] [Related]  

  • 12. CellWalkR: an R package for integrating and visualizing single-cell and bulk data to resolve regulatory elements.
    Przytycki PF; Pollard KS
    Bioinformatics; 2022 Apr; 38(9):2621-2623. PubMed ID: 35274675
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Development and application of an integrated allele-specific pipeline for methylomic and epigenomic analysis (MEA).
    Richard Albert J; Koike T; Younesy H; Thompson R; Bogutz AB; Karimi MM; Lorincz MC
    BMC Genomics; 2018 Jun; 19(1):463. PubMed ID: 29907088
    [TBL] [Abstract][Full Text] [Related]  

  • 14. INTEGRATE-neo: a pipeline for personalized gene fusion neoantigen discovery.
    Zhang J; Mardis ER; Maher CA
    Bioinformatics; 2017 Feb; 33(4):555-557. PubMed ID: 27797777
    [TBL] [Abstract][Full Text] [Related]  

  • 15. EpiSAFARI: sensitive detection of valleys in epigenetic signals for enhancing annotations of functional elements.
    Harmanci A; Harmanci AS; Swaminathan J; Gopalakrishnan V
    Bioinformatics; 2020 Feb; 36(4):1014-1021. PubMed ID: 31501853
    [TBL] [Abstract][Full Text] [Related]  

  • 16. chromswitch: a flexible method to detect chromatin state switches.
    Jessa S; Kleinman CL
    Bioinformatics; 2018 Jul; 34(13):2286-2288. PubMed ID: 29438498
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Rust-Bio: a fast and safe bioinformatics library.
    Köster J
    Bioinformatics; 2016 Feb; 32(3):444-6. PubMed ID: 26446134
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Personal Cancer Genome Reporter: variant interpretation report for precision oncology.
    Nakken S; Fournous G; Vodák D; Aasheim LB; Myklebost O; Hovig E
    Bioinformatics; 2018 May; 34(10):1778-1780. PubMed ID: 29272339
    [TBL] [Abstract][Full Text] [Related]  

  • 19. decorate: differential epigenetic correlation test.
    Hoffman GE; Bendl J; Girdhar K; Roussos P
    Bioinformatics; 2020 May; 36(9):2856-2861. PubMed ID: 32003784
    [TBL] [Abstract][Full Text] [Related]  

  • 20. BART: a transcription factor prediction tool with query gene sets or epigenomic profiles.
    Wang Z; Civelek M; Miller CL; Sheffield NC; Guertin MJ; Zang C
    Bioinformatics; 2018 Aug; 34(16):2867-2869. PubMed ID: 29608647
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.