These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

589 related articles for article (PubMed ID: 29377894)

  • 1. The extent of ribosome queuing in budding yeast.
    Diament A; Feldman A; Schochet E; Kupiec M; Arava Y; Tuller T
    PLoS Comput Biol; 2018 Jan; 14(1):e1005951. PubMed ID: 29377894
    [TBL] [Abstract][Full Text] [Related]  

  • 2. riboWaltz: Optimization of ribosome P-site positioning in ribosome profiling data.
    Lauria F; Tebaldi T; Bernabò P; Groen EJN; Gillingwater TH; Viero G
    PLoS Comput Biol; 2018 Aug; 14(8):e1006169. PubMed ID: 30102689
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Active Ribosome Profiling with RiboLace: From Bench to Data Analysis.
    Clamer M; Lauria F; Tebaldi T; Viero G
    Methods Mol Biol; 2021; 2252():201-220. PubMed ID: 33765277
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Translation complex profile sequencing to study the in vivo dynamics of mRNA-ribosome interactions during translation initiation, elongation and termination.
    Shirokikh NE; Archer SK; Beilharz TH; Powell D; Preiss T
    Nat Protoc; 2017 Apr; 12(4):697-731. PubMed ID: 28253237
    [TBL] [Abstract][Full Text] [Related]  

  • 5. High-Resolution Analysis of Coronavirus Gene Expression by RNA Sequencing and Ribosome Profiling.
    Irigoyen N; Firth AE; Jones JD; Chung BY; Siddell SG; Brierley I
    PLoS Pathog; 2016 Feb; 12(2):e1005473. PubMed ID: 26919232
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Ribosome profiling: a tool for quantitative evaluation of dynamics in mRNA translation.
    Juntawong P; Hummel M; Bazin J; Bailey-Serres J
    Methods Mol Biol; 2015; 1284():139-73. PubMed ID: 25757771
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Protein synthesis rates and ribosome occupancies reveal determinants of translation elongation rates.
    Riba A; Di Nanni N; Mittal N; Arhné E; Schmidt A; Zavolan M
    Proc Natl Acad Sci U S A; 2019 Jul; 116(30):15023-15032. PubMed ID: 31292258
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Using the Ribodeblur pipeline to recover A-sites from yeast ribosome profiling data.
    Wang H; Kingsford C; McManus CJ
    Methods; 2018 Mar; 137():67-70. PubMed ID: 29330118
    [TBL] [Abstract][Full Text] [Related]  

  • 9. GNN Codon Adjacency Tunes Protein Translation.
    Sun J; Hwang P; Sakkas ED; Zhou Y; Perez L; Dave I; Kwon JB; McMahon AE; Wichman M; Raval M; Scopino K; Krizanc D; Thayer KM; Weir MP
    Int J Mol Sci; 2024 May; 25(11):. PubMed ID: 38892101
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Polyamine Control of Translation Elongation Regulates Start Site Selection on Antizyme Inhibitor mRNA via Ribosome Queuing.
    Ivanov IP; Shin BS; Loughran G; Tzani I; Young-Baird SK; Cao C; Atkins JF; Dever TE
    Mol Cell; 2018 Apr; 70(2):254-264.e6. PubMed ID: 29677493
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Exploring Ribosome Positioning on Translating Transcripts with Ribosome Profiling.
    Spealman P; Wang H; May G; Kingsford C; McManus CJ
    Methods Mol Biol; 2016; 1358():71-97. PubMed ID: 26463378
    [TBL] [Abstract][Full Text] [Related]  

  • 12. The ribosome profiling strategy for monitoring translation in vivo by deep sequencing of ribosome-protected mRNA fragments.
    Ingolia NT; Brar GA; Rouskin S; McGeachy AM; Weissman JS
    Nat Protoc; 2012 Jul; 7(8):1534-50. PubMed ID: 22836135
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Genome-wide translational profiling by ribosome footprinting.
    Ingolia NT
    Methods Enzymol; 2010; 470():119-42. PubMed ID: 20946809
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Ribosome profiling reveals the rhythmic liver translatome and circadian clock regulation by upstream open reading frames.
    Janich P; Arpat AB; Castelo-Szekely V; Lopes M; Gatfield D
    Genome Res; 2015 Dec; 25(12):1848-59. PubMed ID: 26486724
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Streamlined and sensitive mono- and di-ribosome profiling in yeast and human cells.
    Ferguson L; Upton HE; Pimentel SC; Mok A; Lareau LF; Collins K; Ingolia NT
    Nat Methods; 2023 Nov; 20(11):1704-1715. PubMed ID: 37783882
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Studying Selenoprotein mRNA Translation Using RNA-Seq and Ribosome Profiling.
    Dalley BK; Baird L; Howard MT
    Methods Mol Biol; 2018; 1661():103-123. PubMed ID: 28917040
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Unbiased Quantitative Models of Protein Translation Derived from Ribosome Profiling Data.
    Gritsenko AA; Hulsman M; Reinders MJ; de Ridder D
    PLoS Comput Biol; 2015 Aug; 11(8):e1004336. PubMed ID: 26275099
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Dissecting eukaryotic translation and its control by ribosome density mapping.
    Arava Y; Boas FE; Brown PO; Herschlag D
    Nucleic Acids Res; 2005; 33(8):2421-32. PubMed ID: 15860778
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Ribosome collisions and translation efficiency: optimization by codon usage and mRNA destabilization.
    Mitarai N; Sneppen K; Pedersen S
    J Mol Biol; 2008 Sep; 382(1):236-45. PubMed ID: 18619977
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Genome-wide Translation Profiling by Ribosome-Bound tRNA Capture.
    Chen CW; Tanaka M
    Cell Rep; 2018 Apr; 23(2):608-621. PubMed ID: 29642016
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 30.