205 related articles for article (PubMed ID: 29390109)
21. A Shannon entropy-based filter detects high- quality profile-profile alignments in searches for remote homologues.
Capriotti E; Fariselli P; Rossi I; Casadio R
Proteins; 2004 Feb; 54(2):351-60. PubMed ID: 14696197
[TBL] [Abstract][Full Text] [Related]
22. ProClust: improved clustering of protein sequences with an extended graph-based approach.
Pipenbacher P; Schliep A; Schneckener S; Schönhuth A; Schomburg D; Schrader R
Bioinformatics; 2002; 18 Suppl 2():S182-91. PubMed ID: 12386002
[TBL] [Abstract][Full Text] [Related]
23. LZW-Kernel: fast kernel utilizing variable length code blocks from LZW compressors for protein sequence classification.
Filatov G; Bauwens B; Kertész-Farkas A
Bioinformatics; 2018 Oct; 34(19):3281-3288. PubMed ID: 29741583
[TBL] [Abstract][Full Text] [Related]
24. Fast multiple sequence alignment via multi-armed bandits.
Mazooji K; Shomorony I
Bioinformatics; 2024 Jun; 40(Supplement_1):i328-i336. PubMed ID: 38940160
[TBL] [Abstract][Full Text] [Related]
25. A Completely Reimplemented MPI Bioinformatics Toolkit with a New HHpred Server at its Core.
Zimmermann L; Stephens A; Nam SZ; Rau D; Kübler J; Lozajic M; Gabler F; Söding J; Lupas AN; Alva V
J Mol Biol; 2018 Jul; 430(15):2237-2243. PubMed ID: 29258817
[TBL] [Abstract][Full Text] [Related]
26. An assessment of substitution scores for protein profile-profile comparison.
Ye X; Wang G; Altschul SF
Bioinformatics; 2011 Dec; 27(24):3356-63. PubMed ID: 21998158
[TBL] [Abstract][Full Text] [Related]
27. AQUA: automated quality improvement for multiple sequence alignments.
Muller J; Creevey CJ; Thompson JD; Arendt D; Bork P
Bioinformatics; 2010 Jan; 26(2):263-5. PubMed ID: 19926669
[TBL] [Abstract][Full Text] [Related]
28. Fold recognition by combining sequence profiles derived from evolution and from depth-dependent structural alignment of fragments.
Zhou H; Zhou Y
Proteins; 2005 Feb; 58(2):321-8. PubMed ID: 15523666
[TBL] [Abstract][Full Text] [Related]
29. NOBLAST and JAMBLAST: New Options for BLAST and a Java Application Manager for BLAST results.
Lagnel J; Tsigenopoulos CS; Iliopoulos I
Bioinformatics; 2009 Mar; 25(6):824-6. PubMed ID: 19181685
[TBL] [Abstract][Full Text] [Related]
30. DeepSF: deep convolutional neural network for mapping protein sequences to folds.
Hou J; Adhikari B; Cheng J
Bioinformatics; 2018 Apr; 34(8):1295-1303. PubMed ID: 29228193
[TBL] [Abstract][Full Text] [Related]
31. NanoOK: multi-reference alignment analysis of nanopore sequencing data, quality and error profiles.
Leggett RM; Heavens D; Caccamo M; Clark MD; Davey RP
Bioinformatics; 2016 Jan; 32(1):142-4. PubMed ID: 26382197
[TBL] [Abstract][Full Text] [Related]
32. COMPASS: a tool for comparison of multiple protein alignments with assessment of statistical significance.
Sadreyev R; Grishin N
J Mol Biol; 2003 Feb; 326(1):317-36. PubMed ID: 12547212
[TBL] [Abstract][Full Text] [Related]
33. Scoring profile-to-profile sequence alignments.
Wang G; Dunbrack RL
Protein Sci; 2004 Jun; 13(6):1612-26. PubMed ID: 15152092
[TBL] [Abstract][Full Text] [Related]
34. PASTASpark: multiple sequence alignment meets Big Data.
Abuín JM; Pena TF; Pichel JC
Bioinformatics; 2017 Sep; 33(18):2948-2950. PubMed ID: 28582480
[TBL] [Abstract][Full Text] [Related]
35. Aligning protein sequence and analysing substitution pattern using a class-specific matrix.
Xu HS; Ren WK; Liu XH; Li XQ
J Biosci; 2010 Jun; 35(2):295-314. PubMed ID: 20689185
[TBL] [Abstract][Full Text] [Related]
36. Optimizing the size of the sequence profiles to increase the accuracy of protein sequence alignments generated by profile-profile algorithms.
Poleksic A; Fienup M
Bioinformatics; 2008 May; 24(9):1145-53. PubMed ID: 18337259
[TBL] [Abstract][Full Text] [Related]
37. Granular clustering of de novo protein models.
Guzenko D; Strelkov SV
Bioinformatics; 2017 Feb; 33(3):390-396. PubMed ID: 28171609
[TBL] [Abstract][Full Text] [Related]
38. Incremental window-based protein sequence alignment algorithms.
Rangwala H; Karypis G
Bioinformatics; 2007 Jan; 23(2):e17-23. PubMed ID: 17237087
[TBL] [Abstract][Full Text] [Related]
39. Methods of remote homology detection can be combined to increase coverage by 10% in the midnight zone.
Reid AJ; Yeats C; Orengo CA
Bioinformatics; 2007 Sep; 23(18):2353-60. PubMed ID: 17709341
[TBL] [Abstract][Full Text] [Related]
40. CORAL: aligning conserved core regions across domain families.
Fong JH; Marchler-Bauer A
Bioinformatics; 2009 Aug; 25(15):1862-8. PubMed ID: 19470584
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]
