283 related articles for article (PubMed ID: 29401456)
1. A phylogenetic method to perform genome-wide association studies in microbes that accounts for population structure and recombination.
Collins C; Didelot X
PLoS Comput Biol; 2018 Feb; 14(2):e1005958. PubMed ID: 29401456
[TBL] [Abstract][Full Text] [Related]
2. Benchmarking bacterial genome-wide association study methods using simulated genomes and phenotypes.
Saber MM; Shapiro BJ
Microb Genom; 2020 Mar; 6(3):. PubMed ID: 32100713
[TBL] [Abstract][Full Text] [Related]
3. RAINBOW: Haplotype-based genome-wide association study using a novel SNP-set method.
Hamazaki K; Iwata H
PLoS Comput Biol; 2020 Feb; 16(2):e1007663. PubMed ID: 32059004
[TBL] [Abstract][Full Text] [Related]
4. The influence of recombination on the population structure and evolution of the human pathogen Neisseria meningitidis.
Holmes EC; Urwin R; Maiden MC
Mol Biol Evol; 1999 Jun; 16(6):741-9. PubMed ID: 10368953
[TBL] [Abstract][Full Text] [Related]
5. OPENMENDEL: a cooperative programming project for statistical genetics.
Zhou H; Sinsheimer JS; Bates DM; Chu BB; German CA; Ji SS; Keys KL; Kim J; Ko S; Mosher GD; Papp JC; Sobel EM; Zhai J; Zhou JJ; Lange K
Hum Genet; 2020 Jan; 139(1):61-71. PubMed ID: 30915546
[TBL] [Abstract][Full Text] [Related]
6. A gene-by-gene population genomics platform: de novo assembly, annotation and genealogical analysis of 108 representative Neisseria meningitidis genomes.
Bratcher HB; Corton C; Jolley KA; Parkhill J; Maiden MC
BMC Genomics; 2014 Dec; 15(1):1138. PubMed ID: 25523208
[TBL] [Abstract][Full Text] [Related]
7. graph-GPA: A graphical model for prioritizing GWAS results and investigating pleiotropic architecture.
Chung D; Kim HJ; Zhao H
PLoS Comput Biol; 2017 Feb; 13(2):e1005388. PubMed ID: 28212402
[TBL] [Abstract][Full Text] [Related]
8. Powerful and efficient SNP-set association tests across multiple phenotypes using GWAS summary data.
Guo B; Wu B
Bioinformatics; 2019 Apr; 35(8):1366-1372. PubMed ID: 30239606
[TBL] [Abstract][Full Text] [Related]
9. CollapsABEL: an R library for detecting compound heterozygote alleles in genome-wide association studies.
Zhong K; Karssen LC; Kayser M; Liu F
BMC Bioinformatics; 2016 Apr; 17():156. PubMed ID: 27059780
[TBL] [Abstract][Full Text] [Related]
10. Pleiotropy informed adaptive association test of multiple traits using genome-wide association study summary data.
Masotti M; Guo B; Wu B
Biometrics; 2019 Dec; 75(4):1076-1085. PubMed ID: 31021400
[TBL] [Abstract][Full Text] [Related]
11. Insights from genome-wide approaches to identify variants associated to phenotypes at pan-genome scale: Application to L. monocytogenes' ability to grow in cold conditions.
Fritsch L; Felten A; Palma F; Mariet JF; Radomski N; Mistou MY; Augustin JC; Guillier L
Int J Food Microbiol; 2019 Feb; 291():181-188. PubMed ID: 30530095
[TBL] [Abstract][Full Text] [Related]
12. PhyInformR: phylogenetic experimental design and phylogenomic data exploration in R.
Dornburg A; Fisk JN; Tamagnan J; Townsend JP
BMC Evol Biol; 2016 Dec; 16(1):262. PubMed ID: 27905871
[TBL] [Abstract][Full Text] [Related]
13. Integrate multiple traits to detect novel trait-gene association using GWAS summary data with an adaptive test approach.
Guo B; Wu B
Bioinformatics; 2019 Jul; 35(13):2251-2257. PubMed ID: 30476000
[TBL] [Abstract][Full Text] [Related]
14. Phylogenetic Methods for Genome-Wide Association Studies in Bacteria.
Didelot X
Methods Mol Biol; 2021; 2242():205-220. PubMed ID: 33961226
[TBL] [Abstract][Full Text] [Related]
15. Hogwash: three methods for genome-wide association studies in bacteria.
Saund K; Snitkin ES
Microb Genom; 2020 Nov; 6(11):. PubMed ID: 33206035
[TBL] [Abstract][Full Text] [Related]
16. How powerful are summary-based methods for identifying expression-trait associations under different genetic architectures?
Veturi Y; Ritchie MD
Pac Symp Biocomput; 2018; 23():228-239. PubMed ID: 29218884
[TBL] [Abstract][Full Text] [Related]
17. Bayesian inference of phylogenetic networks from bi-allelic genetic markers.
Zhu J; Wen D; Yu Y; Meudt HM; Nakhleh L
PLoS Comput Biol; 2018 Jan; 14(1):e1005932. PubMed ID: 29320496
[TBL] [Abstract][Full Text] [Related]
18. Robust association tests under different genetic models, allowing for binary or quantitative traits and covariates.
So HC; Sham PC
Behav Genet; 2011 Sep; 41(5):768-75. PubMed ID: 21305351
[TBL] [Abstract][Full Text] [Related]
19. SimBac: simulation of whole bacterial genomes with homologous recombination.
Brown T; Didelot X; Wilson DJ; Maio N
Microb Genom; 2016 Jan; 2(1):. PubMed ID: 27713837
[TBL] [Abstract][Full Text] [Related]
20. The Harvest suite for rapid core-genome alignment and visualization of thousands of intraspecific microbial genomes.
Treangen TJ; Ondov BD; Koren S; Phillippy AM
Genome Biol; 2014; 15(11):524. PubMed ID: 25410596
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
