294 related articles for article (PubMed ID: 29410279)
1. StructureFold2: Bringing chemical probing data into the computational fold of RNA structural analysis.
Tack DC; Tang Y; Ritchey LE; Assmann SM; Bevilacqua PC
Methods; 2018 Jul; 143():12-15. PubMed ID: 29410279
[TBL] [Abstract][Full Text] [Related]
2. In Vivo Genome-Wide RNA Structure Probing with Structure-seq.
Ritchey LE; Su Z; Assmann SM; Bevilacqua PC
Methods Mol Biol; 2019; 1933():305-341. PubMed ID: 30945195
[TBL] [Abstract][Full Text] [Related]
3. Robust statistical modeling improves sensitivity of high-throughput RNA structure probing experiments.
Selega A; Sirocchi C; Iosub I; Granneman S; Sanguinetti G
Nat Methods; 2017 Jan; 14(1):83-89. PubMed ID: 27819660
[TBL] [Abstract][Full Text] [Related]
4. iSeq: Web-Based RNA-seq Data Analysis and Visualization.
Zhang C; Fan C; Gan J; Zhu P; Kong L; Li C
Methods Mol Biol; 2018; 1754():167-181. PubMed ID: 29536443
[TBL] [Abstract][Full Text] [Related]
5. Reproducible Analysis of Sequencing-Based RNA Structure Probing Data with User-Friendly Tools.
Kielpinski LJ; Sidiropoulos N; Vinther J
Methods Enzymol; 2015; 558():153-180. PubMed ID: 26068741
[TBL] [Abstract][Full Text] [Related]
6. StructureFold: genome-wide RNA secondary structure mapping and reconstruction in vivo.
Tang Y; Bouvier E; Kwok CK; Ding Y; Nekrutenko A; Bevilacqua PC; Assmann SM
Bioinformatics; 2015 Aug; 31(16):2668-75. PubMed ID: 25886980
[TBL] [Abstract][Full Text] [Related]
7. SPARTA: Simple Program for Automated reference-based bacterial RNA-seq Transcriptome Analysis.
Johnson BK; Scholz MB; Teal TK; Abramovitch RB
BMC Bioinformatics; 2016 Feb; 17():66. PubMed ID: 26847232
[TBL] [Abstract][Full Text] [Related]
8. Genome-Wide Approaches for RNA Structure Probing.
Silverman IM; Berkowitz ND; Gosai SJ; Gregory BD
Adv Exp Med Biol; 2016; 907():29-59. PubMed ID: 27256381
[TBL] [Abstract][Full Text] [Related]
9. Computational analysis of RNA structures with chemical probing data.
Ge P; Zhang S
Methods; 2015 Jun; 79-80():60-6. PubMed ID: 25687190
[TBL] [Abstract][Full Text] [Related]
10. Dawn of the in vivo RNA structurome and interactome.
Kwok CK
Biochem Soc Trans; 2016 Oct; 44(5):1395-1410. PubMed ID: 27911722
[TBL] [Abstract][Full Text] [Related]
11. RNA Framework: an all-in-one toolkit for the analysis of RNA structures and post-transcriptional modifications.
Incarnato D; Morandi E; Simon LM; Oliviero S
Nucleic Acids Res; 2018 Sep; 46(16):e97. PubMed ID: 29893890
[TBL] [Abstract][Full Text] [Related]
12. RNA structure framework: automated transcriptome-wide reconstruction of RNA secondary structures from high-throughput structure probing data.
Incarnato D; Neri F; Anselmi F; Oliviero S
Bioinformatics; 2016 Feb; 32(3):459-61. PubMed ID: 26487736
[TBL] [Abstract][Full Text] [Related]
13. Methods and advances in RNA characterization and design.
Contreras LM
Methods; 2018 Jul; 143():1-3. PubMed ID: 30017060
[No Abstract] [Full Text] [Related]
14. Methods to Study Long Noncoding RNA Expression and Dynamics in Zebrafish Using RNA Sequencing.
Mathew S; Sivadas A; Sehgal P; Kaushik K; Vellarikkal SK; Scaria V; Sivasubbu S
Methods Mol Biol; 2019; 1912():77-110. PubMed ID: 30635891
[TBL] [Abstract][Full Text] [Related]
15. Data Analysis in Single-Cell Transcriptome Sequencing.
Gao S
Methods Mol Biol; 2018; 1754():311-326. PubMed ID: 29536451
[TBL] [Abstract][Full Text] [Related]
16. Transcriptome Sequencing: RNA-Seq.
Zhang H; He L; Cai L
Methods Mol Biol; 2018; 1754():15-27. PubMed ID: 29536435
[TBL] [Abstract][Full Text] [Related]
17. High-Throughput Nuclease Probing of RNA Structures Using FragSeq.
Uzilov AV; Underwood JG
Methods Mol Biol; 2016; 1490():105-34. PubMed ID: 27665596
[TBL] [Abstract][Full Text] [Related]
18. Genome-Wide Probing of RNA Structures In Vitro Using Nucleases and Deep Sequencing.
Wan Y; Qu K; Ouyang Z; Chang HY
Methods Mol Biol; 2016; 1361():141-60. PubMed ID: 26483021
[TBL] [Abstract][Full Text] [Related]
19. RASP: an atlas of transcriptome-wide RNA secondary structure probing data.
Li P; Zhou X; Xu K; Zhang QC
Nucleic Acids Res; 2021 Jan; 49(D1):D183-D191. PubMed ID: 33068412
[TBL] [Abstract][Full Text] [Related]
20. Mapping RNA Structure In Vitro with SHAPE Chemistry and Next-Generation Sequencing (SHAPE-Seq).
Watters KE; Lucks JB
Methods Mol Biol; 2016; 1490():135-62. PubMed ID: 27665597
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
