BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

337 related articles for article (PubMed ID: 29410279)

  • 21. Mapping RNA Structure In Vitro with SHAPE Chemistry and Next-Generation Sequencing (SHAPE-Seq).
    Watters KE; Lucks JB
    Methods Mol Biol; 2016; 1490():135-62. PubMed ID: 27665597
    [TBL] [Abstract][Full Text] [Related]  

  • 22. QuickRNASeq lifts large-scale RNA-seq data analyses to the next level of automation and interactive visualization.
    Zhao S; Xi L; Quan J; Xi H; Zhang Y; von Schack D; Vincent M; Zhang B
    BMC Genomics; 2016 Jan; 17():39. PubMed ID: 26747388
    [TBL] [Abstract][Full Text] [Related]  

  • 23. Genome-wide profiling of in vivo RNA structure at single-nucleotide resolution using structure-seq.
    Ding Y; Kwok CK; Tang Y; Bevilacqua PC; Assmann SM
    Nat Protoc; 2015 Jul; 10(7):1050-66. PubMed ID: 26086407
    [TBL] [Abstract][Full Text] [Related]  

  • 24. RNAdt: An online tutorial and data portal for the RNA structurome era.
    Zhou N; Bao J
    Biosystems; 2020 Mar; 189():104065. PubMed ID: 31669269
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Improved prediction of RNA secondary structure by integrating the free energy model with restraints derived from experimental probing data.
    Wu Y; Shi B; Ding X; Liu T; Hu X; Yip KY; Yang ZR; Mathews DH; Lu ZJ
    Nucleic Acids Res; 2015 Sep; 43(15):7247-59. PubMed ID: 26170232
    [TBL] [Abstract][Full Text] [Related]  

  • 26. Shiny-Seq: advanced guided transcriptome analysis.
    Sundararajan Z; Knoll R; Hombach P; Becker M; Schultze JL; Ulas T
    BMC Res Notes; 2019 Jul; 12(1):432. PubMed ID: 31319888
    [TBL] [Abstract][Full Text] [Related]  

  • 27. Genome-wide probing RNA structure with the modified DMS-MaPseq in Arabidopsis.
    Wang Z; Wang M; Wang T; Zhang Y; Zhang X
    Methods; 2019 Feb; 155():30-40. PubMed ID: 30503825
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Differential Expression Analysis of RNA-seq Reads: Overview, Taxonomy, and Tools.
    Chowdhury HA; Bhattacharyya DK; Kalita JK
    IEEE/ACM Trans Comput Biol Bioinform; 2020; 17(2):566-586. PubMed ID: 30281477
    [TBL] [Abstract][Full Text] [Related]  

  • 29. DMS-MaPseq for Genome-Wide or Targeted RNA Structure Probing In Vitro and In Vivo.
    Tomezsko P; Swaminathan H; Rouskin S
    Methods Mol Biol; 2021; 2254():219-238. PubMed ID: 33326078
    [TBL] [Abstract][Full Text] [Related]  

  • 30. Polyester: simulating RNA-seq datasets with differential transcript expression.
    Frazee AC; Jaffe AE; Langmead B; Leek JT
    Bioinformatics; 2015 Sep; 31(17):2778-84. PubMed ID: 25926345
    [TBL] [Abstract][Full Text] [Related]  

  • 31. RNA Framework for Assaying the Structure of RNAs by High-Throughput Sequencing.
    Marinus T; Incarnato D
    Methods Mol Biol; 2021; 2284():63-76. PubMed ID: 33835438
    [TBL] [Abstract][Full Text] [Related]  

  • 32. A Guide for Designing and Analyzing RNA-Seq Data.
    Chatterjee A; Ahn A; Rodger EJ; Stockwell PA; Eccles MR
    Methods Mol Biol; 2018; 1783():35-80. PubMed ID: 29767357
    [TBL] [Abstract][Full Text] [Related]  

  • 33. DMS-MaPseq for genome-wide or targeted RNA structure probing in vivo.
    Zubradt M; Gupta P; Persad S; Lambowitz AM; Weissman JS; Rouskin S
    Nat Methods; 2017 Jan; 14(1):75-82. PubMed ID: 27819661
    [TBL] [Abstract][Full Text] [Related]  

  • 34. Molecular Profiling of RNA Tumors Using High-Throughput RNA Sequencing: From Raw Data to Systems Level Analyses.
    da Silveira WA; Hazard ES; Chung D; Hardiman G
    Methods Mol Biol; 2019; 1908():185-204. PubMed ID: 30649729
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Nanopore RNA Sequencing Analysis.
    Leonardi T; Leger A
    Methods Mol Biol; 2021; 2284():569-578. PubMed ID: 33835464
    [TBL] [Abstract][Full Text] [Related]  

  • 36. SHAPE-Seq 2.0: systematic optimization and extension of high-throughput chemical probing of RNA secondary structure with next generation sequencing.
    Loughrey D; Watters KE; Settle AH; Lucks JB
    Nucleic Acids Res; 2014 Dec; 42(21):e165. PubMed ID: 25303992
    [TBL] [Abstract][Full Text] [Related]  

  • 37. READemption-a tool for the computational analysis of deep-sequencing-based transcriptome data.
    Förstner KU; Vogel J; Sharma CM
    Bioinformatics; 2014 Dec; 30(23):3421-3. PubMed ID: 25123900
    [TBL] [Abstract][Full Text] [Related]  

  • 38. Understanding the transcriptome through RNA structure.
    Wan Y; Kertesz M; Spitale RC; Segal E; Chang HY
    Nat Rev Genet; 2011 Aug; 12(9):641-55. PubMed ID: 21850044
    [TBL] [Abstract][Full Text] [Related]  

  • 39. Single-Cell Transcriptome Analysis Using SINCERA Pipeline.
    Guo M; Xu Y
    Methods Mol Biol; 2018; 1751():209-222. PubMed ID: 29508300
    [TBL] [Abstract][Full Text] [Related]  

  • 40. Mod-seq: high-throughput sequencing for chemical probing of RNA structure.
    Talkish J; May G; Lin Y; Woolford JL; McManus CJ
    RNA; 2014 May; 20(5):713-20. PubMed ID: 24664469
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 17.