BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

84 related articles for article (PubMed ID: 29415010)

  • 1. shinyGISPA: A web application for characterizing phenotype by gene sets using multiple omics data combinations.
    Dwivedi B; Kowalski J
    PLoS One; 2018; 13(2):e0192563. PubMed ID: 29415010
    [TBL] [Abstract][Full Text] [Related]  

  • 2. shinySISPA: A web tool for defining sample groups using gene sets from multiple-omics data.
    Dwivedi B; Kowalski J
    F1000Res; 2018; 7():213. PubMed ID: 30430005
    [TBL] [Abstract][Full Text] [Related]  

  • 3. The Gene Set Builder: collation, curation, and distribution of sets of genes.
    Yusuf D; Lim JS; Wasserman WW
    BMC Bioinformatics; 2005 Dec; 6():305. PubMed ID: 16371163
    [TBL] [Abstract][Full Text] [Related]  

  • 4. NOJAH: NOt Just Another Heatmap for genome-wide cluster analysis.
    Rupji M; Dwivedi B; Kowalski J
    PLoS One; 2019; 14(3):e0204542. PubMed ID: 30921318
    [TBL] [Abstract][Full Text] [Related]  

  • 5. GeneTrail--advanced gene set enrichment analysis.
    Backes C; Keller A; Kuentzer J; Kneissl B; Comtesse N; Elnakady YA; Müller R; Meese E; Lenhof HP
    Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W186-92. PubMed ID: 17526521
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Knowledge Base Commons (KBCommons) v1.1: a universal framework for multi-omics data integration and biological discoveries.
    Zeng S; Lyu Z; Narisetti SRK; Xu D; Joshi T
    BMC Genomics; 2019 Dec; 20(Suppl 11):947. PubMed ID: 31856718
    [TBL] [Abstract][Full Text] [Related]  

  • 7. The Cancer Omics Atlas: an integrative resource for cancer omics annotations.
    Sun Q; Li M; Wang X
    BMC Med Genomics; 2018 Aug; 11(1):63. PubMed ID: 30089500
    [TBL] [Abstract][Full Text] [Related]  

  • 8. GS2: an efficiently computable measure of GO-based similarity of gene sets.
    Ruths T; Ruths D; Nakhleh L
    Bioinformatics; 2009 May; 25(9):1178-84. PubMed ID: 19289444
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Gene integrated set profile analysis: a context-based approach for inferring biological endpoints.
    Kowalski J; Dwivedi B; Newman S; Switchenko JM; Pauly R; Gutman DA; Arora J; Gandhi K; Ainslie K; Doho G; Qin Z; Moreno CS; Rossi MR; Vertino PM; Lonial S; Bernal-Mizrachi L; Boise LH
    Nucleic Acids Res; 2016 Apr; 44(7):e69. PubMed ID: 26826710
    [TBL] [Abstract][Full Text] [Related]  

  • 10. CANCERTOOL: A Visualization and Representation Interface to Exploit Cancer Datasets.
    Cortazar AR; Torrano V; Martín-Martín N; Caro-Maldonado A; Camacho L; Hermanova I; Guruceaga E; Lorenzo-Martín LF; Caloto R; Gomis RR; Apaolaza I; Quesada V; Trka J; Gomez-Muñoz A; Vincent S; Bustelo XR; Planes FJ; Aransay AM; Carracedo A
    Cancer Res; 2018 Nov; 78(21):6320-6328. PubMed ID: 30232219
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Melanoma Explorer: a web application to allow easy reanalysis of publicly available and clinically annotated melanoma omics data sets.
    Strbenac D; Wang K; Wang X; Dong J; Mann GJ; Mueller S; Yang JYH
    Melanoma Res; 2019 Jun; 29(3):342-344. PubMed ID: 31026248
    [TBL] [Abstract][Full Text] [Related]  

  • 12. WormBase: methods for data mining and comparative genomics.
    Harris TW; Stein LD
    Methods Mol Biol; 2006; 351():31-50. PubMed ID: 16988424
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Onto-Tools: new additions and improvements in 2006.
    Khatri P; Voichita C; Kattan K; Ansari N; Khatri A; Georgescu C; Tarca AL; Draghici S
    Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W206-11. PubMed ID: 17584796
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Mergeomics: a web server for identifying pathological pathways, networks, and key regulators via multidimensional data integration.
    Arneson D; Bhattacharya A; Shu L; Mäkinen VP; Yang X
    BMC Genomics; 2016 Sep; 17(1):722. PubMed ID: 27612452
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Bioinformatics visualization and integration with open standards: the Bluejay genomic browser.
    Turinsky AL; Ah-Seng AC; Gordon PM; Stromer JN; Taschuk ML; Xu EW; Sensen CW
    In Silico Biol; 2005; 5(2):187-98. PubMed ID: 15972014
    [TBL] [Abstract][Full Text] [Related]  

  • 16. GIANT API: an application programming interface for functional genomics.
    Roberts AM; Wong AK; Fisk I; Troyanskaya OG
    Nucleic Acids Res; 2016 Jul; 44(W1):W587-92. PubMed ID: 27098035
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Predictive networks: a flexible, open source, web application for integration and analysis of human gene networks.
    Haibe-Kains B; Olsen C; Djebbari A; Bontempi G; Correll M; Bouton C; Quackenbush J
    Nucleic Acids Res; 2012 Jan; 40(Database issue):D866-75. PubMed ID: 22096235
    [TBL] [Abstract][Full Text] [Related]  

  • 18. GEO2Enrichr: browser extension and server app to extract gene sets from GEO and analyze them for biological functions.
    Gundersen GW; Jones MR; Rouillard AD; Kou Y; Monteiro CD; Feldmann AS; Hu KS; Ma'ayan A
    Bioinformatics; 2015 Sep; 31(18):3060-2. PubMed ID: 25971742
    [TBL] [Abstract][Full Text] [Related]  

  • 19. CASAS: Cancer Survival Analysis Suite, a web based application.
    Rupji M; Zhang X; Kowalski J
    F1000Res; 2017; 6():919. PubMed ID: 28928946
    [TBL] [Abstract][Full Text] [Related]  

  • 20. FirebrowseR: an R client to the Broad Institute's Firehose Pipeline.
    Deng M; Brägelmann J; Kryukov I; Saraiva-Agostinho N; Perner S
    Database (Oxford); 2017; 2017():. PubMed ID: 28062517
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 5.