183 related articles for article (PubMed ID: 29434031)
1. A Survey of Virus Recombination Uncovers Canonical Features of Artificial Chimeras Generated During Deep Sequencing Library Preparation.
Peccoud J; Lequime S; Moltini-Conclois I; Giraud I; Lambrechts L; Gilbert C
G3 (Bethesda); 2018 Mar; 8(4):1129-1138. PubMed ID: 29434031
[TBL] [Abstract][Full Text] [Related]
2. Comparative clinical sample preparation of DNA and RNA viral nucleic acids for a commercial deep sequencing system (Illumina MiSeq(®)).
Ullmann LS; de Camargo Tozato C; Malossi CD; da Cruz TF; Cavalcante RV; Kurissio JK; Cagnini DQ; Rodrigues MV; Biondo AW; Araujo JP
J Virol Methods; 2015 Aug; 220():60-3. PubMed ID: 25901649
[TBL] [Abstract][Full Text] [Related]
3. ClickSeq: Replacing Fragmentation and Enzymatic Ligation with Click-Chemistry to Prevent Sequence Chimeras.
Jaworski E; Routh A
Methods Mol Biol; 2018; 1712():71-85. PubMed ID: 29224069
[TBL] [Abstract][Full Text] [Related]
4. Discovery of functional genomic motifs in viruses with ViReMa-a Virus Recombination Mapper-for analysis of next-generation sequencing data.
Routh A; Johnson JE
Nucleic Acids Res; 2014 Jan; 42(2):e11. PubMed ID: 24137010
[TBL] [Abstract][Full Text] [Related]
5. ChimPipe: accurate detection of fusion genes and transcription-induced chimeras from RNA-seq data.
Rodríguez-Martín B; Palumbo E; Marco-Sola S; Griebel T; Ribeca P; Alonso G; Rastrojo A; Aguado B; Guigó R; Djebali S
BMC Genomics; 2017 Jan; 18(1):7. PubMed ID: 28049418
[TBL] [Abstract][Full Text] [Related]
6. Systematic Characteristic Exploration of the Chimeras Generated in Multiple Displacement Amplification through Next Generation Sequencing Data Reanalysis.
Tu J; Guo J; Li J; Gao S; Yao B; Lu Z
PLoS One; 2015; 10(10):e0139857. PubMed ID: 26440104
[TBL] [Abstract][Full Text] [Related]
7. Hackflex: low-cost, high-throughput, Illumina Nextera Flex library construction.
Gaio D; Anantanawat K; To J; Liu M; Monahan L; Darling AE
Microb Genom; 2022 Jan; 8(1):. PubMed ID: 35014949
[TBL] [Abstract][Full Text] [Related]
8. Optimization of enzymatic fragmentation is crucial to maximize genome coverage: a comparison of library preparation methods for Illumina sequencing.
Ribarska T; Bjørnstad PM; Sundaram AYM; Gilfillan GD
BMC Genomics; 2022 Feb; 23(1):92. PubMed ID: 35105301
[TBL] [Abstract][Full Text] [Related]
9. ViReMa: a virus recombination mapper of next-generation sequencing data characterizes diverse recombinant viral nucleic acids.
Sotcheff S; Zhou Y; Yeung J; Sun Y; Johnson JE; Torbett BE; Routh AL
Gigascience; 2023 Mar; 12():. PubMed ID: 36939008
[TBL] [Abstract][Full Text] [Related]
10. Optimization and cost-saving in tagmentation-based mate-pair library preparation and sequencing.
Tatsumi K; Nishimura O; Itomi K; Tanegashima C; Kuraku S
Biotechniques; 2015 May; 58(5):253-7. PubMed ID: 25967904
[TBL] [Abstract][Full Text] [Related]
11. Parallel ClickSeq and Nanopore sequencing elucidates the rapid evolution of defective-interfering RNAs in Flock House virus.
Jaworski E; Routh A
PLoS Pathog; 2017 May; 13(5):e1006365. PubMed ID: 28475646
[TBL] [Abstract][Full Text] [Related]
12. Preparing Fosmid Mate-Paired Libraries Using Cre-LoxP Recombination.
Peng Z; Froula JL; Cheng JF
Methods Mol Biol; 2017; 1642():263-284. PubMed ID: 28815506
[TBL] [Abstract][Full Text] [Related]
13. Nucleotide-resolution profiling of RNA recombination in the encapsidated genome of a eukaryotic RNA virus by next-generation sequencing.
Routh A; Ordoukhanian P; Johnson JE
J Mol Biol; 2012 Dec; 424(5):257-69. PubMed ID: 23069247
[TBL] [Abstract][Full Text] [Related]
14. Inexpensive multiplexed library preparation for megabase-sized genomes.
Baym M; Kryazhimskiy S; Lieberman TD; Chung H; Desai MM; Kishony R
PLoS One; 2015; 10(5):e0128036. PubMed ID: 26000737
[TBL] [Abstract][Full Text] [Related]
15. Improved workflows for high throughput library preparation using the transposome-based Nextera system.
Lamble S; Batty E; Attar M; Buck D; Bowden R; Lunter G; Crook D; El-Fahmawi B; Piazza P
BMC Biotechnol; 2013 Nov; 13():104. PubMed ID: 24256843
[TBL] [Abstract][Full Text] [Related]
16. Arbovirus detection in insect vectors by rapid, high-throughput pyrosequencing.
Bishop-Lilly KA; Turell MJ; Willner KM; Butani A; Nolan NM; Lentz SM; Akmal A; Mateczun A; Brahmbhatt TN; Sozhamannan S; Whitehouse CA; Read TD
PLoS Negl Trop Dis; 2010 Nov; 4(11):e878. PubMed ID: 21085471
[TBL] [Abstract][Full Text] [Related]
17. A performance evaluation of Nextera XT and KAPA HyperPlus for rapid Illumina library preparation of long-range mitogenome amplicons.
Ring JD; Sturk-Andreaggi K; Peck MA; Marshall C
Forensic Sci Int Genet; 2017 Jul; 29():174-180. PubMed ID: 28448897
[TBL] [Abstract][Full Text] [Related]
18. A novel ultra high-throughput 16S rRNA gene amplicon sequencing library preparation method for the Illumina HiSeq platform.
de Muinck EJ; Trosvik P; Gilfillan GD; Hov JR; Sundaram AYM
Microbiome; 2017 Jul; 5(1):68. PubMed ID: 28683838
[TBL] [Abstract][Full Text] [Related]
19. Bead-linked transposomes enable a normalization-free workflow for NGS library preparation.
Bruinsma S; Burgess J; Schlingman D; Czyz A; Morrell N; Ballenger C; Meinholz H; Brady L; Khanna A; Freeberg L; Jackson RG; Mathonet P; Verity SC; Slatter AF; Golshani R; Grunenwald H; Schroth GP; Gormley NA
BMC Genomics; 2018 Oct; 19(1):722. PubMed ID: 30285621
[TBL] [Abstract][Full Text] [Related]
20. Comparison of the sequencing bias of currently available library preparation kits for Illumina sequencing of bacterial genomes and metagenomes.
Sato MP; Ogura Y; Nakamura K; Nishida R; Gotoh Y; Hayashi M; Hisatsune J; Sugai M; Takehiko I; Hayashi T
DNA Res; 2019 Oct; 26(5):391-398. PubMed ID: 31364694
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]