BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

192 related articles for article (PubMed ID: 29438498)

  • 1. chromswitch: a flexible method to detect chromatin state switches.
    Jessa S; Kleinman CL
    Bioinformatics; 2018 Jul; 34(13):2286-2288. PubMed ID: 29438498
    [TBL] [Abstract][Full Text] [Related]  

  • 2. diffloop: a computational framework for identifying and analyzing differential DNA loops from sequencing data.
    Lareau CA; Aryee MJ
    Bioinformatics; 2018 Feb; 34(4):672-674. PubMed ID: 29028898
    [TBL] [Abstract][Full Text] [Related]  

  • 3. SNPhood: investigate, quantify and visualise the epigenomic neighbourhood of SNPs using NGS data.
    Arnold C; Bhat P; Zaugg JB
    Bioinformatics; 2016 Aug; 32(15):2359-60. PubMed ID: 27153574
    [TBL] [Abstract][Full Text] [Related]  

  • 4. multiHiCcompare: joint normalization and comparative analysis of complex Hi-C experiments.
    Stansfield JC; Cresswell KG; Dozmorov MG
    Bioinformatics; 2019 Sep; 35(17):2916-2923. PubMed ID: 30668639
    [TBL] [Abstract][Full Text] [Related]  

  • 5. esATAC: an easy-to-use systematic pipeline for ATAC-seq data analysis.
    Wei Z; Zhang W; Fang H; Li Y; Wang X
    Bioinformatics; 2018 Aug; 34(15):2664-2665. PubMed ID: 29522192
    [TBL] [Abstract][Full Text] [Related]  

  • 6. TFEA.ChIP: a tool kit for transcription factor binding site enrichment analysis capitalizing on ChIP-seq datasets.
    Puente-Santamaria L; Wasserman WW; Del Peso L
    Bioinformatics; 2019 Dec; 35(24):5339-5340. PubMed ID: 31347689
    [TBL] [Abstract][Full Text] [Related]  

  • 7. monaLisa: an R/Bioconductor package for identifying regulatory motifs.
    Machlab D; Burger L; Soneson C; Rijli FM; Schübeler D; Stadler MB
    Bioinformatics; 2022 Apr; 38(9):2624-2625. PubMed ID: 35199152
    [TBL] [Abstract][Full Text] [Related]  

  • 8. FunChIP: an R/Bioconductor package for functional classification of ChIP-seq shapes.
    Parodi ACL; Sangalli LM; Vantini S; Amati B; Secchi P; Morelli MJ
    Bioinformatics; 2017 Aug; 33(16):2570-2572. PubMed ID: 28398543
    [TBL] [Abstract][Full Text] [Related]  

  • 9. primirTSS: an R package for identifying cell-specific microRNA transcription start sites.
    Li P; Xu Q; Hua X; Xie Z; Li J; Wang J
    Bioinformatics; 2020 Jun; 36(11):3605-3606. PubMed ID: 32170928
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Development and application of an integrated allele-specific pipeline for methylomic and epigenomic analysis (MEA).
    Richard Albert J; Koike T; Younesy H; Thompson R; Bogutz AB; Karimi MM; Lorincz MC
    BMC Genomics; 2018 Jun; 19(1):463. PubMed ID: 29907088
    [TBL] [Abstract][Full Text] [Related]  

  • 11. breakpointR: an R/Bioconductor package to localize strand state changes in Strand-seq data.
    Porubsky D; Sanders AD; Taudt A; Colomé-Tatché M; Lansdorp PM; Guryev V
    Bioinformatics; 2020 Feb; 36(4):1260-1261. PubMed ID: 31504176
    [TBL] [Abstract][Full Text] [Related]  

  • 12. SMITE: an R/Bioconductor package that identifies network modules by integrating genomic and epigenomic information.
    Wijetunga NA; Johnston AD; Maekawa R; Delahaye F; Ulahannan N; Kim K; Greally JM
    BMC Bioinformatics; 2017 Jan; 18(1):41. PubMed ID: 28100166
    [TBL] [Abstract][Full Text] [Related]  

  • 13. decorate: differential epigenetic correlation test.
    Hoffman GE; Bendl J; Girdhar K; Roussos P
    Bioinformatics; 2020 May; 36(9):2856-2861. PubMed ID: 32003784
    [TBL] [Abstract][Full Text] [Related]  

  • 14. GenomicScores: seamless access to genomewide position-specific scores from R and Bioconductor.
    Puigdevall P; Castelo R
    Bioinformatics; 2018 Sep; 34(18):3208-3210. PubMed ID: 29718111
    [TBL] [Abstract][Full Text] [Related]  

  • 15. DaMiRseq-an R/Bioconductor package for data mining of RNA-Seq data: normalization, feature selection and classification.
    Chiesa M; Colombo GI; Piacentini L
    Bioinformatics; 2018 Apr; 34(8):1416-1418. PubMed ID: 29236969
    [TBL] [Abstract][Full Text] [Related]  

  • 16. scGate: marker-based purification of cell types from heterogeneous single-cell RNA-seq datasets.
    Andreatta M; Berenstein AJ; Carmona SJ
    Bioinformatics; 2022 Apr; 38(9):2642-2644. PubMed ID: 35258562
    [TBL] [Abstract][Full Text] [Related]  

  • 17. LedPred: an R/bioconductor package to predict regulatory sequences using support vector machines.
    Seyres D; Darbo E; Perrin L; Herrmann C; González A
    Bioinformatics; 2016 Apr; 32(7):1091-3. PubMed ID: 26628586
    [TBL] [Abstract][Full Text] [Related]  

  • 18. snakePipes: facilitating flexible, scalable and integrative epigenomic analysis.
    Bhardwaj V; Heyne S; Sikora K; Rabbani L; Rauer M; Kilpert F; Richter AS; Ryan DP; Manke T
    Bioinformatics; 2019 Nov; 35(22):4757-4759. PubMed ID: 31134269
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Continuous chromatin state feature annotation of the human epigenome.
    Daneshpajouh H; Chen B; Shokraneh N; Masoumi S; Wiese KC; Libbrecht MW
    Bioinformatics; 2022 May; 38(11):3029-3036. PubMed ID: 35451453
    [TBL] [Abstract][Full Text] [Related]  

  • 20. The epiGenomic Efficient Correlator (epiGeEC) tool allows fast comparison of user datasets with thousands of public epigenomic datasets.
    Laperle J; Hébert-Deschamps S; Raby J; de Lima Morais DA; Barrette M; Bujold D; Bastin C; Robert MA; Nadeau JF; Harel M; Nordell-Markovits A; Veilleux A; Bourque G; Jacques PÉ
    Bioinformatics; 2019 Feb; 35(4):674-676. PubMed ID: 30052804
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 10.