153 related articles for article (PubMed ID: 29438994)
1. DRUID: a pipeline for transcriptome-wide measurements of mRNA stability.
Lugowski A; Nicholson B; Rissland OS
RNA; 2018 May; 24(5):623-632. PubMed ID: 29438994
[TBL] [Abstract][Full Text] [Related]
2. Determining mRNA half-lives on a transcriptome-wide scale.
Lugowski A; Nicholson B; Rissland OS
Methods; 2018 Mar; 137():90-98. PubMed ID: 29247756
[TBL] [Abstract][Full Text] [Related]
3. 5'-Bromouridine IP Chase (BRIC)-Seq to Determine RNA Half-Lives.
Yamada T; Imamachi N; Onoguchi-Mizutani R; Imamura K; Suzuki Y; Akimitsu N
Methods Mol Biol; 2018; 1720():1-13. PubMed ID: 29236247
[TBL] [Abstract][Full Text] [Related]
4. HALO--a Java framework for precise transcript half-life determination.
Friedel CC; Kaufmann S; Dölken L; Zimmer R
Bioinformatics; 2010 May; 26(9):1264-6. PubMed ID: 20299326
[TBL] [Abstract][Full Text] [Related]
5. BRIC-seq: a genome-wide approach for determining RNA stability in mammalian cells.
Imamachi N; Tani H; Mizutani R; Imamura K; Irie T; Suzuki Y; Akimitsu N
Methods; 2014 May; 67(1):55-63. PubMed ID: 23872059
[TBL] [Abstract][Full Text] [Related]
6. Analysis of RNA decay factor mediated RNA stability contributions on RNA abundance.
Maekawa S; Imamachi N; Irie T; Tani H; Matsumoto K; Mizutani R; Imamura K; Kakeda M; Yada T; Sugano S; Suzuki Y; Akimitsu N
BMC Genomics; 2015 Mar; 16(1):154. PubMed ID: 25879614
[TBL] [Abstract][Full Text] [Related]
7. Integration of ENCODE RNAseq and eCLIP Data Sets.
Boucas J
Methods Mol Biol; 2018; 1720():111-129. PubMed ID: 29236254
[TBL] [Abstract][Full Text] [Related]
8. Metabolic labeling and recovery of nascent RNA to accurately quantify mRNA stability.
Russo J; Heck AM; Wilusz J; Wilusz CJ
Methods; 2017 May; 120():39-48. PubMed ID: 28219744
[TBL] [Abstract][Full Text] [Related]
9. Computational inference of mRNA stability from histone modification and transcriptome profiles.
Wang C; Tian R; Zhao Q; Xu H; Meyer CA; Li C; Zhang Y; Liu XS
Nucleic Acids Res; 2012 Aug; 40(14):6414-23. PubMed ID: 22495509
[TBL] [Abstract][Full Text] [Related]
10. Determining mRNA Decay Rates Using RNA Approach to Equilibrium Sequencing (RATE-Seq).
Abdul-Rahman F; Gresham D
Methods Mol Biol; 2018; 1720():15-24. PubMed ID: 29236248
[TBL] [Abstract][Full Text] [Related]
11. Transcriptome-wide RNA processing kinetics revealed using extremely short 4tU labeling.
Barrass JD; Reid JE; Huang Y; Hector RD; Sanguinetti G; Beggs JD; Granneman S
Genome Biol; 2015 Dec; 16():282. PubMed ID: 26679539
[TBL] [Abstract][Full Text] [Related]
12. A Bioinformatics Pipeline for the Identification of CHO Cell Differential Gene Expression from RNA-Seq Data.
Monger C; Motheramgari K; McSharry J; Barron N; Clarke C
Methods Mol Biol; 2017; 1603():169-186. PubMed ID: 28493130
[TBL] [Abstract][Full Text] [Related]
13. Genome-wide analysis of long noncoding RNA turnover.
Tani H; Imamachi N; Mizutani R; Imamura K; Kwon Y; Miyazaki S; Maekawa S; Suzuki Y; Akimitsu N
Methods Mol Biol; 2015; 1262():305-20. PubMed ID: 25555590
[TBL] [Abstract][Full Text] [Related]
14. Bioinformatics Pipeline for Transcriptome Sequencing Analysis.
Djebali S; Wucher V; Foissac S; Hitte C; Corre E; Derrien T
Methods Mol Biol; 2017; 1468():201-19. PubMed ID: 27662878
[TBL] [Abstract][Full Text] [Related]
15. PAT-seq: a method to study the integration of 3'-UTR dynamics with gene expression in the eukaryotic transcriptome.
Harrison PF; Powell DR; Clancy JL; Preiss T; Boag PR; Traven A; Seemann T; Beilharz TH
RNA; 2015 Aug; 21(8):1502-10. PubMed ID: 26092945
[TBL] [Abstract][Full Text] [Related]
16. Robust statistical modeling improves sensitivity of high-throughput RNA structure probing experiments.
Selega A; Sirocchi C; Iosub I; Granneman S; Sanguinetti G
Nat Methods; 2017 Jan; 14(1):83-89. PubMed ID: 27819660
[TBL] [Abstract][Full Text] [Related]
17. Transcriptome-Wide Profiling of RNA Stability.
Fasching N; Petržílek J; Popitsch N; Herzog VA; Ameres SL
Methods Mol Biol; 2022; 2404():311-330. PubMed ID: 34694617
[TBL] [Abstract][Full Text] [Related]
18. Systematic probing of the bacterial RNA structurome to reveal new functions.
Ignatova Z; Narberhaus F
Curr Opin Microbiol; 2017 Apr; 36():14-19. PubMed ID: 28160611
[TBL] [Abstract][Full Text] [Related]
19. LEMONS - A Tool for the Identification of Splice Junctions in Transcriptomes of Organisms Lacking Reference Genomes.
Levin L; Bar-Yaacov D; Bouskila A; Chorev M; Carmel L; Mishmar D
PLoS One; 2015; 10(11):e0143329. PubMed ID: 26606265
[TBL] [Abstract][Full Text] [Related]
20. Identification of Methylated Transcripts Using the TRIBE Approach.
Worpenberg L; Jakobi T; Dieterich C; Roignant JY
Methods Mol Biol; 2019; 1870():89-106. PubMed ID: 30539549
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
