BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

386 related articles for article (PubMed ID: 29440222)

  • 1. SQANTI: extensive characterization of long-read transcript sequences for quality control in full-length transcriptome identification and quantification.
    Tardaguila M; de la Fuente L; Marti C; Pereira C; Pardo-Palacios FJ; Del Risco H; Ferrell M; Mellado M; Macchietto M; Verheggen K; Edelmann M; Ezkurdia I; Vazquez J; Tress M; Mortazavi A; Martens L; Rodriguez-Navarro S; Moreno-Manzano V; Conesa A
    Genome Res; 2018 Feb; 28(3):396-411. PubMed ID: 29440222
    [TBL] [Abstract][Full Text] [Related]  

  • 2. A
    Ramberg S; Høyheim B; Østbye TK; Andreassen R
    Front Genet; 2021; 12():656334. PubMed ID: 33986770
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Full-length isoform concatenation sequencing to resolve cancer transcriptome complexity.
    Wijeratne S; Gonzalez MEH; Roach K; Miller KE; Schieffer KM; Fitch JR; Leonard J; White P; Kelly BJ; Cottrell CE; Mardis ER; Wilson RK; Miller AR
    BMC Genomics; 2024 Jan; 25(1):122. PubMed ID: 38287261
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Enhanced protein isoform characterization through long-read proteogenomics.
    Miller RM; Jordan BT; Mehlferber MM; Jeffery ED; Chatzipantsiou C; Kaur S; Millikin RJ; Dai Y; Tiberi S; Castaldi PJ; Shortreed MR; Luckey CJ; Conesa A; Smith LM; Deslattes Mays A; Sheynkman GM
    Genome Biol; 2022 Mar; 23(1):69. PubMed ID: 35241129
    [TBL] [Abstract][Full Text] [Related]  

  • 5. The Long Read Transcriptome of Rice (Oryza sativa ssp. japonica var. Nipponbare) Reveals Novel Transcripts.
    Hasan S; Huang L; Liu Q; Perlo V; O'Keeffe A; Margarido GRA; Furtado A; Henry RJ
    Rice (N Y); 2022 Jun; 15(1):29. PubMed ID: 35689714
    [TBL] [Abstract][Full Text] [Related]  

  • 6. SQANTI-SIM: a simulator of controlled transcript novelty for lrRNA-seq benchmark.
    Mestre-Tomás J; Liu T; Pardo-Palacios F; Conesa A
    Genome Biol; 2023 Dec; 24(1):286. PubMed ID: 38082294
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Illuminating the dark side of the human transcriptome with long read transcript sequencing.
    Kuo RI; Cheng Y; Zhang R; Brown JWS; Smith J; Archibald AL; Burt DW
    BMC Genomics; 2020 Oct; 21(1):751. PubMed ID: 33126848
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Unveiling the transcriptomic complexity of Miscanthus sinensis using a combination of PacBio long read- and Illumina short read sequencing platforms.
    Wang Y; Li X; Wang C; Gao L; Wu Y; Ni X; Sun J; Jiang J
    BMC Genomics; 2021 Sep; 22(1):690. PubMed ID: 34551715
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Methodologies for Transcript Profiling Using Long-Read Technologies.
    Oikonomopoulos S; Bayega A; Fahiminiya S; Djambazian H; Berube P; Ragoussis J
    Front Genet; 2020; 11():606. PubMed ID: 32733532
    [TBL] [Abstract][Full Text] [Related]  

  • 10. PacBio full-length cDNA sequencing integrated with RNA-seq reads drastically improves the discovery of splicing transcripts in rice.
    Zhang G; Sun M; Wang J; Lei M; Li C; Zhao D; Huang J; Li W; Li S; Li J; Yang J; Luo Y; Hu S; Zhang B
    Plant J; 2019 Jan; 97(2):296-305. PubMed ID: 30288819
    [TBL] [Abstract][Full Text] [Related]  

  • 11. SQANTI-SIM: a simulator of controlled transcript novelty for lrRNA-seq benchmark.
    Mestre-Tomás J; Liu T; Pardo-Palacios F; Conesa A
    bioRxiv; 2023 Aug; ():. PubMed ID: 37662216
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Uncovering full-length transcript isoforms of sugarcane cultivar Khon Kaen 3 using single-molecule long-read sequencing.
    Piriyapongsa J; Kaewprommal P; Vaiwsri S; Anuntakarun S; Wirojsirasak W; Punpee P; Klomsa-Ard P; Shaw PJ; Pootakham W; Yoocha T; Sangsrakru D; Tangphatsornruang S; Tongsima S; Tragoonrung S
    PeerJ; 2018; 6():e5818. PubMed ID: 30397543
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Long-read sequencing of the coffee bean transcriptome reveals the diversity of full-length transcripts.
    Cheng B; Furtado A; Henry RJ
    Gigascience; 2017 Nov; 6(11):1-13. PubMed ID: 29048540
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Integrative profiling of Epstein-Barr virus transcriptome using a multiplatform approach.
    Fülöp Á; Torma G; Moldován N; Szenthe K; Bánáti F; Almsarrhad IAA; Csabai Z; Tombácz D; Minárovits J; Boldogkői Z
    Virol J; 2022 Jan; 19(1):7. PubMed ID: 34991630
    [TBL] [Abstract][Full Text] [Related]  

  • 15. PacBio single molecule long-read sequencing provides insight into the complexity and diversity of the Pinctada fucata martensii transcriptome.
    Zhang H; Xu H; Liu H; Pan X; Xu M; Zhang G; He M
    BMC Genomics; 2020 Jul; 21(1):481. PubMed ID: 32660426
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Corrigendum: SQANTI: extensive characterization of long-read transcript sequences for quality control in full-length transcriptome identification and quantification.
    Tardaguila M; de la Fuente L; Marti C; Pereira C; Pardo-Palacios FJ; Del Risco H; Ferrell M; Mellado M; Macchietto M; Verheggen K; Edelmann M; Ezkurdia I; Vazquez J; Tress M; Mortazavi A; Martens L; Rodriguez-Navarro S; Moreno-Manzano V; Conesa A
    Genome Res; 2018 Jul; 28(7):1096. PubMed ID: 29967126
    [No Abstract]   [Full Text] [Related]  

  • 17. PacBio single-molecule long-read sequencing shed new light on the transcripts and splice isoforms of the perennial ryegrass.
    Xie L; Teng K; Tan P; Chao Y; Li Y; Guo W; Han L
    Mol Genet Genomics; 2020 Mar; 295(2):475-489. PubMed ID: 31894400
    [TBL] [Abstract][Full Text] [Related]  

  • 18. A survey of the complex transcriptome from the highly polyploid sugarcane genome using full-length isoform sequencing and de novo assembly from short read sequencing.
    Hoang NV; Furtado A; Mason PJ; Marquardt A; Kasirajan L; Thirugnanasambandam PP; Botha FC; Henry RJ
    BMC Genomics; 2017 May; 18(1):395. PubMed ID: 28532419
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Merging short and stranded long reads improves transcript assembly.
    Kainth AS; Haddad GA; Hall JM; Ruthenburg AJ
    PLoS Comput Biol; 2023 Oct; 19(10):e1011576. PubMed ID: 37883581
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Analysis of transcripts and splice isoforms in Medicago sativa L. by single-molecule long-read sequencing.
    Chao Y; Yuan J; Guo T; Xu L; Mu Z; Han L
    Plant Mol Biol; 2019 Feb; 99(3):219-235. PubMed ID: 30600412
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 20.