141 related articles for article (PubMed ID: 29447218)
1. FindPrimaryPairs: An efficient algorithm for predicting element-transferring reactant/product pairs in metabolic networks.
Steffensen JL; Dufault-Thompson K; Zhang Y
PLoS One; 2018; 13(2):e0192891. PubMed ID: 29447218
[TBL] [Abstract][Full Text] [Related]
2. Using PSAMM for the Curation and Analysis of Genome-Scale Metabolic Models.
Dufault-Thompson K; Steffensen JL; Zhang Y
Methods Mol Biol; 2018; 1716():131-150. PubMed ID: 29222752
[TBL] [Abstract][Full Text] [Related]
3. NICEpath: Finding metabolic pathways in large networks through atom-conserving substrate-product pairs.
Hafner J; Hatzimanikatis V
Bioinformatics; 2021 Oct; 37(20):3560-3568. PubMed ID: 34003971
[TBL] [Abstract][Full Text] [Related]
4. CobraMod: a pathway-centric curation tool for constraint-based metabolic models.
Camborda S; Weder JN; Töpfer N
Bioinformatics; 2022 Apr; 38(9):2654-2656. PubMed ID: 35201291
[TBL] [Abstract][Full Text] [Related]
5. Predicting novel metabolic pathways through subgraph mining.
Sankar A; Ranu S; Raman K
Bioinformatics; 2017 Dec; 33(24):3955-3963. PubMed ID: 28961716
[TBL] [Abstract][Full Text] [Related]
6. An algorithm for the reduction of genome-scale metabolic network models to meaningful core models.
Erdrich P; Steuer R; Klamt S
BMC Syst Biol; 2015 Aug; 9():48. PubMed ID: 26286864
[TBL] [Abstract][Full Text] [Related]
7. PSAMM: A Portable System for the Analysis of Metabolic Models.
Steffensen JL; Dufault-Thompson K; Zhang Y
PLoS Comput Biol; 2016 Feb; 12(2):e1004732. PubMed ID: 26828591
[TBL] [Abstract][Full Text] [Related]
8. ModelExplorer - software for visual inspection and inconsistency correction of genome-scale metabolic reconstructions.
Martyushenko N; Almaas E
BMC Bioinformatics; 2019 Jan; 20(1):56. PubMed ID: 30691403
[TBL] [Abstract][Full Text] [Related]
9. SWIFTCORE: a tool for the context-specific reconstruction of genome-scale metabolic networks.
Tefagh M; Boyd SP
BMC Bioinformatics; 2020 Apr; 21(1):140. PubMed ID: 32293238
[TBL] [Abstract][Full Text] [Related]
10. Accurate atom-mapping computation for biochemical reactions.
Latendresse M; Malerich JP; Travers M; Karp PD
J Chem Inf Model; 2012 Nov; 52(11):2970-82. PubMed ID: 22963657
[TBL] [Abstract][Full Text] [Related]
11. Reactant pairs and reaction organization patterns produced by a new rule-based approach.
Vazquez-Hernandez C; Loza A; Gutierrez-Rios RM
BMC Res Notes; 2018 Aug; 11(1):608. PubMed ID: 30143048
[TBL] [Abstract][Full Text] [Related]
12. Metabolic pathfinding using RPAIR annotation.
Faust K; Croes D; van Helden J
J Mol Biol; 2009 May; 388(2):390-414. PubMed ID: 19281817
[TBL] [Abstract][Full Text] [Related]
13. Identification of reaction organization patterns that naturally cluster enzymatic transformations.
Vazquez-Hernandez C; Loza A; Peguero-Sanchez E; Segovia L; Gutierrez-Rios RM
BMC Syst Biol; 2018 May; 12(1):63. PubMed ID: 29848336
[TBL] [Abstract][Full Text] [Related]
14. Enumerating all possible biosynthetic pathways in metabolic networks.
Ravikrishnan A; Nasre M; Raman K
Sci Rep; 2018 Jul; 8(1):9932. PubMed ID: 29967471
[TBL] [Abstract][Full Text] [Related]
15. An extended bioreaction database that significantly improves reconstruction and analysis of genome-scale metabolic networks.
Stelzer M; Sun J; Kamphans T; Fekete SP; Zeng AP
Integr Biol (Camb); 2011 Nov; 3(11):1071-86. PubMed ID: 21952610
[TBL] [Abstract][Full Text] [Related]
16. rMTA: robust metabolic transformation analysis.
Valcárcel LV; Torrano V; Tobalina L; Carracedo A; Planes FJ
Bioinformatics; 2019 Nov; 35(21):4350-4355. PubMed ID: 30923806
[TBL] [Abstract][Full Text] [Related]
17. ErrorTracer: an algorithm for identifying the origins of inconsistencies in genome-scale metabolic models.
Martyushenko N; Almaas E
Bioinformatics; 2020 Mar; 36(5):1644-1646. PubMed ID: 31598631
[TBL] [Abstract][Full Text] [Related]
18. Efficient Reconstruction of Predictive Consensus Metabolic Network Models.
van Heck RG; Ganter M; Martins Dos Santos VA; Stelling J
PLoS Comput Biol; 2016 Aug; 12(8):e1005085. PubMed ID: 27563720
[TBL] [Abstract][Full Text] [Related]
19. RetSynth: determining all optimal and sub-optimal synthetic pathways that facilitate synthesis of target compounds in chassis organisms.
Whitmore LS; Nguyen B; Pinar A; George A; Hudson CM
BMC Bioinformatics; 2019 Sep; 20(1):461. PubMed ID: 31500573
[TBL] [Abstract][Full Text] [Related]
20. wTO: an R package for computing weighted topological overlap and a consensus network with integrated visualization tool.
Gysi DM; Voigt A; Fragoso TM; Almaas E; Nowick K
BMC Bioinformatics; 2018 Oct; 19(1):392. PubMed ID: 30355288
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]