BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

141 related articles for article (PubMed ID: 29447218)

  • 1. FindPrimaryPairs: An efficient algorithm for predicting element-transferring reactant/product pairs in metabolic networks.
    Steffensen JL; Dufault-Thompson K; Zhang Y
    PLoS One; 2018; 13(2):e0192891. PubMed ID: 29447218
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Using PSAMM for the Curation and Analysis of Genome-Scale Metabolic Models.
    Dufault-Thompson K; Steffensen JL; Zhang Y
    Methods Mol Biol; 2018; 1716():131-150. PubMed ID: 29222752
    [TBL] [Abstract][Full Text] [Related]  

  • 3. NICEpath: Finding metabolic pathways in large networks through atom-conserving substrate-product pairs.
    Hafner J; Hatzimanikatis V
    Bioinformatics; 2021 Oct; 37(20):3560-3568. PubMed ID: 34003971
    [TBL] [Abstract][Full Text] [Related]  

  • 4. CobraMod: a pathway-centric curation tool for constraint-based metabolic models.
    Camborda S; Weder JN; Töpfer N
    Bioinformatics; 2022 Apr; 38(9):2654-2656. PubMed ID: 35201291
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Predicting novel metabolic pathways through subgraph mining.
    Sankar A; Ranu S; Raman K
    Bioinformatics; 2017 Dec; 33(24):3955-3963. PubMed ID: 28961716
    [TBL] [Abstract][Full Text] [Related]  

  • 6. An algorithm for the reduction of genome-scale metabolic network models to meaningful core models.
    Erdrich P; Steuer R; Klamt S
    BMC Syst Biol; 2015 Aug; 9():48. PubMed ID: 26286864
    [TBL] [Abstract][Full Text] [Related]  

  • 7. PSAMM: A Portable System for the Analysis of Metabolic Models.
    Steffensen JL; Dufault-Thompson K; Zhang Y
    PLoS Comput Biol; 2016 Feb; 12(2):e1004732. PubMed ID: 26828591
    [TBL] [Abstract][Full Text] [Related]  

  • 8. ModelExplorer - software for visual inspection and inconsistency correction of genome-scale metabolic reconstructions.
    Martyushenko N; Almaas E
    BMC Bioinformatics; 2019 Jan; 20(1):56. PubMed ID: 30691403
    [TBL] [Abstract][Full Text] [Related]  

  • 9. SWIFTCORE: a tool for the context-specific reconstruction of genome-scale metabolic networks.
    Tefagh M; Boyd SP
    BMC Bioinformatics; 2020 Apr; 21(1):140. PubMed ID: 32293238
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Accurate atom-mapping computation for biochemical reactions.
    Latendresse M; Malerich JP; Travers M; Karp PD
    J Chem Inf Model; 2012 Nov; 52(11):2970-82. PubMed ID: 22963657
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Reactant pairs and reaction organization patterns produced by a new rule-based approach.
    Vazquez-Hernandez C; Loza A; Gutierrez-Rios RM
    BMC Res Notes; 2018 Aug; 11(1):608. PubMed ID: 30143048
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Metabolic pathfinding using RPAIR annotation.
    Faust K; Croes D; van Helden J
    J Mol Biol; 2009 May; 388(2):390-414. PubMed ID: 19281817
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Identification of reaction organization patterns that naturally cluster enzymatic transformations.
    Vazquez-Hernandez C; Loza A; Peguero-Sanchez E; Segovia L; Gutierrez-Rios RM
    BMC Syst Biol; 2018 May; 12(1):63. PubMed ID: 29848336
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Enumerating all possible biosynthetic pathways in metabolic networks.
    Ravikrishnan A; Nasre M; Raman K
    Sci Rep; 2018 Jul; 8(1):9932. PubMed ID: 29967471
    [TBL] [Abstract][Full Text] [Related]  

  • 15. An extended bioreaction database that significantly improves reconstruction and analysis of genome-scale metabolic networks.
    Stelzer M; Sun J; Kamphans T; Fekete SP; Zeng AP
    Integr Biol (Camb); 2011 Nov; 3(11):1071-86. PubMed ID: 21952610
    [TBL] [Abstract][Full Text] [Related]  

  • 16. rMTA: robust metabolic transformation analysis.
    Valcárcel LV; Torrano V; Tobalina L; Carracedo A; Planes FJ
    Bioinformatics; 2019 Nov; 35(21):4350-4355. PubMed ID: 30923806
    [TBL] [Abstract][Full Text] [Related]  

  • 17. ErrorTracer: an algorithm for identifying the origins of inconsistencies in genome-scale metabolic models.
    Martyushenko N; Almaas E
    Bioinformatics; 2020 Mar; 36(5):1644-1646. PubMed ID: 31598631
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Efficient Reconstruction of Predictive Consensus Metabolic Network Models.
    van Heck RG; Ganter M; Martins Dos Santos VA; Stelling J
    PLoS Comput Biol; 2016 Aug; 12(8):e1005085. PubMed ID: 27563720
    [TBL] [Abstract][Full Text] [Related]  

  • 19. RetSynth: determining all optimal and sub-optimal synthetic pathways that facilitate synthesis of target compounds in chassis organisms.
    Whitmore LS; Nguyen B; Pinar A; George A; Hudson CM
    BMC Bioinformatics; 2019 Sep; 20(1):461. PubMed ID: 31500573
    [TBL] [Abstract][Full Text] [Related]  

  • 20. wTO: an R package for computing weighted topological overlap and a consensus network with integrated visualization tool.
    Gysi DM; Voigt A; Fragoso TM; Almaas E; Nowick K
    BMC Bioinformatics; 2018 Oct; 19(1):392. PubMed ID: 30355288
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.