641 related articles for article (PubMed ID: 29472610)
1. scNMT-seq enables joint profiling of chromatin accessibility DNA methylation and transcription in single cells.
Clark SJ; Argelaguet R; Kapourani CA; Stubbs TM; Lee HJ; Alda-Catalinas C; Krueger F; Sanguinetti G; Kelsey G; Marioni JC; Stegle O; Reik W
Nat Commun; 2018 Feb; 9(1):781. PubMed ID: 29472610
[TBL] [Abstract][Full Text] [Related]
2. Unbiased chromatin accessibility profiling by RED-seq uncovers unique features of nucleosome variants in vivo.
Chen PB; Zhu LJ; Hainer SJ; McCannell KN; Fazzio TG
BMC Genomics; 2014 Dec; 15(1):1104. PubMed ID: 25494698
[TBL] [Abstract][Full Text] [Related]
3. Simultaneous profiling of chromatin accessibility and DNA methylation in complete plant genomes using long-read sequencing.
Leduque B; Edera A; Vitte C; Quadrana L
Nucleic Acids Res; 2024 Jun; 52(11):6285-6297. PubMed ID: 38676941
[TBL] [Abstract][Full Text] [Related]
4. Defining Regulatory Elements in the Human Genome Using Nucleosome Occupancy and Methylome Sequencing (NOMe-Seq).
Rhie SK; Schreiner S; Farnham PJ
Methods Mol Biol; 2018; 1766():209-229. PubMed ID: 29605855
[TBL] [Abstract][Full Text] [Related]
5. Simultaneous Measurement of DNA Methylation and Nucleosome Occupancy in Single Cells Using scNOMe-Seq.
Wasney M; Pott S
Methods Mol Biol; 2023; 2611():231-247. PubMed ID: 36807071
[TBL] [Abstract][Full Text] [Related]
6. MPE-seq, a new method for the genome-wide analysis of chromatin structure.
Ishii H; Kadonaga JT; Ren B
Proc Natl Acad Sci U S A; 2015 Jul; 112(27):E3457-65. PubMed ID: 26080409
[TBL] [Abstract][Full Text] [Related]
7. Simultaneous measurement of chromatin accessibility, DNA methylation, and nucleosome phasing in single cells.
Pott S
Elife; 2017 Jun; 6():. PubMed ID: 28653622
[TBL] [Abstract][Full Text] [Related]
8. Nucleosome Occupancy and Methylome Sequencing (NOMe-seq).
Lay FD; Kelly TK; Jones PA
Methods Mol Biol; 2018; 1708():267-284. PubMed ID: 29224149
[TBL] [Abstract][Full Text] [Related]
9. Genome-wide nucleosome positioning during embryonic stem cell development.
Teif VB; Vainshtein Y; Caudron-Herger M; Mallm JP; Marth C; Höfer T; Rippe K
Nat Struct Mol Biol; 2012 Nov; 19(11):1185-92. PubMed ID: 23085715
[TBL] [Abstract][Full Text] [Related]
10. CAME: identification of chromatin accessibility from nucleosome occupancy and methylome sequencing.
Piao Y; Lee SK; Lee EJ; Robertson KD; Shi H; Ryu KH; Choi JH
Bioinformatics; 2017 Apr; 33(8):1139-1146. PubMed ID: 28035030
[TBL] [Abstract][Full Text] [Related]
11. Foxa2 and H2A.Z mediate nucleosome depletion during embryonic stem cell differentiation.
Li Z; Gadue P; Chen K; Jiao Y; Tuteja G; Schug J; Li W; Kaestner KH
Cell; 2012 Dec; 151(7):1608-16. PubMed ID: 23260146
[TBL] [Abstract][Full Text] [Related]
12. High-resolution mapping of chromatin packaging in mouse embryonic stem cells and sperm.
Carone BR; Hung JH; Hainer SJ; Chou MT; Carone DM; Weng Z; Fazzio TG; Rando OJ
Dev Cell; 2014 Jul; 30(1):11-22. PubMed ID: 24998598
[TBL] [Abstract][Full Text] [Related]
13. Principles of nucleosome organization revealed by single-cell micrococcal nuclease sequencing.
Lai B; Gao W; Cui K; Xie W; Tang Q; Jin W; Hu G; Ni B; Zhao K
Nature; 2018 Oct; 562(7726):281-285. PubMed ID: 30258225
[TBL] [Abstract][Full Text] [Related]
14. Methylscaper: an R/Shiny app for joint visualization of DNA methylation and nucleosome occupancy in single-molecule and single-cell data.
Knight P; Gauthier ML; Pardo CE; Darst RP; Kapadia K; Browder H; Morton E; Riva A; Kladde MP; Bacher R
Bioinformatics; 2021 Dec; 37(24):4857-4859. PubMed ID: 34125875
[TBL] [Abstract][Full Text] [Related]
15. Single-Cell Joint Profiling of Open Chromatin and Transcriptome by Paired-Seq.
Zhu C; Wang Z; Ren B
Methods Mol Biol; 2023; 2611():155-185. PubMed ID: 36807069
[TBL] [Abstract][Full Text] [Related]
16. Transcriptional and epigenetic dynamics during specification of human embryonic stem cells.
Gifford CA; Ziller MJ; Gu H; Trapnell C; Donaghey J; Tsankov A; Shalek AK; Kelley DR; Shishkin AA; Issner R; Zhang X; Coyne M; Fostel JL; Holmes L; Meldrim J; Guttman M; Epstein C; Park H; Kohlbacher O; Rinn J; Gnirke A; Lander ES; Bernstein BE; Meissner A
Cell; 2013 May; 153(5):1149-63. PubMed ID: 23664763
[TBL] [Abstract][Full Text] [Related]
17. Genome-wide profiling of nucleosome position and chromatin accessibility in single cells using scMNase-seq.
Gao W; Lai B; Ni B; Zhao K
Nat Protoc; 2020 Jan; 15(1):68-85. PubMed ID: 31836865
[TBL] [Abstract][Full Text] [Related]
18. Single-molecule long-read sequencing reveals the chromatin basis of gene expression.
Wang Y; Wang A; Liu Z; Thurman AL; Powers LS; Zou M; Zhao Y; Hefel A; Li Y; Zabner J; Au KF
Genome Res; 2019 Aug; 29(8):1329-1342. PubMed ID: 31201211
[TBL] [Abstract][Full Text] [Related]
19. A chromatin integration labelling method enables epigenomic profiling with lower input.
Harada A; Maehara K; Handa T; Arimura Y; Nogami J; Hayashi-Takanaka Y; Shirahige K; Kurumizaka H; Kimura H; Ohkawa Y
Nat Cell Biol; 2019 Feb; 21(2):287-296. PubMed ID: 30532068
[TBL] [Abstract][Full Text] [Related]
20. Chromatin and Single-Cell RNA-Seq Profiling Reveal Dynamic Signaling and Metabolic Transitions during Human Spermatogonial Stem Cell Development.
Guo J; Grow EJ; Yi C; Mlcochova H; Maher GJ; Lindskog C; Murphy PJ; Wike CL; Carrell DT; Goriely A; Hotaling JM; Cairns BR
Cell Stem Cell; 2017 Oct; 21(4):533-546.e6. PubMed ID: 28985528
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
