413 related articles for article (PubMed ID: 29490630)
1. ATACseqQC: a Bioconductor package for post-alignment quality assessment of ATAC-seq data.
Ou J; Liu H; Yu J; Kelliher MA; Castilla LH; Lawson ND; Zhu LJ
BMC Genomics; 2018 Mar; 19(1):169. PubMed ID: 29490630
[TBL] [Abstract][Full Text] [Related]
2. AIAP: A Quality Control and Integrative Analysis Package to Improve ATAC-seq Data Analysis.
Liu S; Li D; Lyu C; Gontarz PM; Miao B; Madden PAF; Wang T; Zhang B
Genomics Proteomics Bioinformatics; 2021 Aug; 19(4):641-651. PubMed ID: 34273560
[TBL] [Abstract][Full Text] [Related]
3. Efficient chromatin accessibility mapping in situ by nucleosome-tethered tagmentation.
Henikoff S; Henikoff JG; Kaya-Okur HS; Ahmad K
Elife; 2020 Nov; 9():. PubMed ID: 33191916
[TBL] [Abstract][Full Text] [Related]
4. A workflow for simplified analysis of ATAC-cap-seq data in R.
Shrestha RK; Ding P; Jones JDG; MacLean D
Gigascience; 2018 Jul; 7(7):. PubMed ID: 29961827
[TBL] [Abstract][Full Text] [Related]
5. Measuring Chromatin Accessibility: ATAC-Seq.
Sahu SK; Basu A; Tiwari VK
Methods Mol Biol; 2021; 2351():105-121. PubMed ID: 34382186
[TBL] [Abstract][Full Text] [Related]
6. Quantification, Dynamic Visualization, and Validation of Bias in ATAC-Seq Data with ataqv.
Orchard P; Kyono Y; Hensley J; Kitzman JO; Parker SCJ
Cell Syst; 2020 Mar; 10(3):298-306.e4. PubMed ID: 32213349
[TBL] [Abstract][Full Text] [Related]
7. esATAC: an easy-to-use systematic pipeline for ATAC-seq data analysis.
Wei Z; Zhang W; Fang H; Li Y; Wang X
Bioinformatics; 2018 Aug; 34(15):2664-2665. PubMed ID: 29522192
[TBL] [Abstract][Full Text] [Related]
8. HMMRATAC: a Hidden Markov ModeleR for ATAC-seq.
Tarbell ED; Liu T
Nucleic Acids Res; 2019 Sep; 47(16):e91. PubMed ID: 31199868
[TBL] [Abstract][Full Text] [Related]
9. FindIT2: an R/Bioconductor package to identify influential transcription factor and targets based on multi-omics data.
Shang GD; Xu ZG; Wan MC; Wang FX; Wang JW
BMC Genomics; 2022 Apr; 23(Suppl 1):272. PubMed ID: 35392802
[TBL] [Abstract][Full Text] [Related]
10. Assay for Transposase-Accessible Chromatin Using Sequencing (ATAC-seq) Data Analysis.
Miskimen KLS; Chan ER; Haines JL
Curr Protoc Hum Genet; 2017 Jan; 92():20.4.1-20.4.13. PubMed ID: 28075484
[TBL] [Abstract][Full Text] [Related]
11. Analytical Approaches for ATAC-seq Data Analysis.
Smith JP; Sheffield NC
Curr Protoc Hum Genet; 2020 Jun; 106(1):e101. PubMed ID: 32543102
[TBL] [Abstract][Full Text] [Related]
12. Detect accessible chromatin using ATAC-sequencing, from principle to applications.
Sun Y; Miao N; Sun T
Hereditas; 2019; 156():29. PubMed ID: 31427911
[TBL] [Abstract][Full Text] [Related]
13. ChIPseeker: an R/Bioconductor package for ChIP peak annotation, comparison and visualization.
Yu G; Wang LG; He QY
Bioinformatics; 2015 Jul; 31(14):2382-3. PubMed ID: 25765347
[TBL] [Abstract][Full Text] [Related]
14. GUIDEseq: a bioconductor package to analyze GUIDE-Seq datasets for CRISPR-Cas nucleases.
Zhu LJ; Lawrence M; Gupta A; Pagès H; Kucukural A; Garber M; Wolfe SA
BMC Genomics; 2017 May; 18(1):379. PubMed ID: 28506212
[TBL] [Abstract][Full Text] [Related]
15. ATAC-Seq Analysis of Accessible Chromatin: From Experimental Steps to Data Analysis.
Tatara M; Ikeda T; Namekawa SH; Maezawa S
Methods Mol Biol; 2023; 2577():65-81. PubMed ID: 36173566
[TBL] [Abstract][Full Text] [Related]
16. Chromatin accessibility profiling by ATAC-seq.
Grandi FC; Modi H; Kampman L; Corces MR
Nat Protoc; 2022 Jun; 17(6):1518-1552. PubMed ID: 35478247
[TBL] [Abstract][Full Text] [Related]
17. ATAC-seq: A Method for Assaying Chromatin Accessibility Genome-Wide.
Buenrostro JD; Wu B; Chang HY; Greenleaf WJ
Curr Protoc Mol Biol; 2015 Jan; 109():21.29.1-21.29.9. PubMed ID: 25559105
[TBL] [Abstract][Full Text] [Related]
18. ATACgraph: Profiling Genome-Wide Chromatin Accessibility From ATAC-seq.
Lu RJ; Liu YT; Huang CW; Yen MR; Lin CY; Chen PY
Front Genet; 2020; 11():618478. PubMed ID: 33584814
[TBL] [Abstract][Full Text] [Related]
19. [Advances in assay for transposase-accessible chromatin with high-throughput sequencing].
Wu J; Quan JP; Ye Y; Wu ZF; Yang J; Yang M; Zheng EQ
Yi Chuan; 2020 Apr; 42(4):333-346. PubMed ID: 32312702
[TBL] [Abstract][Full Text] [Related]
20. CoBRA: Containerized Bioinformatics Workflow for Reproducible ChIP/ATAC-seq Analysis.
Qiu X; Feit AS; Feiglin A; Xie Y; Kesten N; Taing L; Perkins J; Gu S; Li Y; Cejas P; Zhou N; Jeselsohn R; Brown M; Shirley Liu X; Long HW
Genomics Proteomics Bioinformatics; 2021 Aug; 19(4):652-661. PubMed ID: 34284136
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]