617 related articles for article (PubMed ID: 29492869)
1. UBCG: Up-to-date bacterial core gene set and pipeline for phylogenomic tree reconstruction.
Na SI; Kim YO; Yoon SH; Ha SM; Baek I; Chun J
J Microbiol; 2018 Apr; 56(4):280-285. PubMed ID: 29492869
[TBL] [Abstract][Full Text] [Related]
2. UACG: Up-to-Date Archaeal Core Genes and Software for Phylogenomic Tree Reconstruction.
Na SI; Bailey MJ; Chalita M; Cho JH; Chun J
J Microbiol; 2023 Jul; 61(7):683-692. PubMed ID: 37566173
[TBL] [Abstract][Full Text] [Related]
3. bcgTree: automatized phylogenetic tree building from bacterial core genomes.
Ankenbrand MJ; Keller A
Genome; 2016 Oct; 59(10):783-791. PubMed ID: 27603265
[TBL] [Abstract][Full Text] [Related]
4. EzBioCloud: a genome-driven database and platform for microbiome identification and discovery.
Chalita M; Kim YO; Park S; Oh HS; Cho JH; Moon J; Baek N; Moon C; Lee K; Yang J; Nam GG; Jung Y; Na SI; Bailey MJ; Chun J
Int J Syst Evol Microbiol; 2024 Jun; 74(6):. PubMed ID: 38888585
[TBL] [Abstract][Full Text] [Related]
5. UBCG2: Up-to-date bacterial core genes and pipeline for phylogenomic analysis.
Kim J; Na SI; Kim D; Chun J
J Microbiol; 2021 Jun; 59(6):609-615. PubMed ID: 34052993
[TBL] [Abstract][Full Text] [Related]
6. ezTree: an automated pipeline for identifying phylogenetic marker genes and inferring evolutionary relationships among uncultivated prokaryotic draft genomes.
Wu YW
BMC Genomics; 2018 Jan; 19(Suppl 1):921. PubMed ID: 29363425
[TBL] [Abstract][Full Text] [Related]
7. Introducing EzBioCloud: a taxonomically united database of 16S rRNA gene sequences and whole-genome assemblies.
Yoon SH; Ha SM; Kwon S; Lim J; Kim Y; Seo H; Chun J
Int J Syst Evol Microbiol; 2017 May; 67(5):1613-1617. PubMed ID: 28005526
[TBL] [Abstract][Full Text] [Related]
8. The All-Species Living Tree project: a 16S rRNA-based phylogenetic tree of all sequenced type strains.
Yarza P; Richter M; Peplies J; Euzeby J; Amann R; Schleifer KH; Ludwig W; Glöckner FO; Rosselló-Móra R
Syst Appl Microbiol; 2008 Sep; 31(4):241-50. PubMed ID: 18692976
[TBL] [Abstract][Full Text] [Related]
9. VBCG: 20 validated bacterial core genes for phylogenomic analysis with high fidelity and resolution.
Tian R; Imanian B
Microbiome; 2023 Nov; 11(1):247. PubMed ID: 37936197
[TBL] [Abstract][Full Text] [Related]
10. Phylogenetics and the cohesion of bacterial genomes.
Daubin V; Moran NA; Ochman H
Science; 2003 Aug; 301(5634):829-32. PubMed ID: 12907801
[TBL] [Abstract][Full Text] [Related]
11. Phylogenomic analysis of bacterial and archaeal sequences with AMPHORA2.
Wu M; Scott AJ
Bioinformatics; 2012 Apr; 28(7):1033-4. PubMed ID: 22332237
[TBL] [Abstract][Full Text] [Related]
12. Towards a balanced view of the bacterial tree of life.
Schulz F; Eloe-Fadrosh EA; Bowers RM; Jarett J; Nielsen T; Ivanova NN; Kyrpides NC; Woyke T
Microbiome; 2017 Oct; 5(1):140. PubMed ID: 29041958
[TBL] [Abstract][Full Text] [Related]
13. The Archaeal Transcription Termination Factor aCPSF1 is a Robust Phylogenetic Marker for Archaeal Taxonomy.
Li J; Zheng X; Li L; Zhang S; Ren M; Huang L; Dong X
Microbiol Spectr; 2021 Dec; 9(3):e0153921. PubMed ID: 34878325
[TBL] [Abstract][Full Text] [Related]
14. Phylogeny Reconstruction with Alignment-Free Method That Corrects for Horizontal Gene Transfer.
Bromberg R; Grishin NV; Otwinowski Z
PLoS Comput Biol; 2016 Jun; 12(6):e1004985. PubMed ID: 27336403
[TBL] [Abstract][Full Text] [Related]
15. Quantitatively Partitioning Microbial Genomic Traits among Taxonomic Ranks across the Microbial Tree of Life.
Royalty TM; Steen AD
mSphere; 2019 Aug; 4(4):. PubMed ID: 31462411
[TBL] [Abstract][Full Text] [Related]
16. RibAlign: a software tool and database for eubacterial phylogeny based on concatenated ribosomal protein subunits.
Teeling H; Gloeckner FO
BMC Bioinformatics; 2006 Feb; 7():66. PubMed ID: 16476165
[TBL] [Abstract][Full Text] [Related]
17. A phylum-level bacterial phylogenetic marker database.
Wang Z; Wu M
Mol Biol Evol; 2013 Jun; 30(6):1258-62. PubMed ID: 23519313
[TBL] [Abstract][Full Text] [Related]
18. Correcting for 16S rRNA gene copy numbers in microbiome surveys remains an unsolved problem.
Louca S; Doebeli M; Parfrey LW
Microbiome; 2018 Feb; 6(1):41. PubMed ID: 29482646
[TBL] [Abstract][Full Text] [Related]
19. An emerging phylogenetic core of Archaea: phylogenies of transcription and translation machineries converge following addition of new genome sequences.
Brochier C; Forterre P; Gribaldo S
BMC Evol Biol; 2005 Jun; 5():36. PubMed ID: 15932645
[TBL] [Abstract][Full Text] [Related]
20. A large-scale evaluation of algorithms to calculate average nucleotide identity.
Yoon SH; Ha SM; Lim J; Kwon S; Chun J
Antonie Van Leeuwenhoek; 2017 Oct; 110(10):1281-1286. PubMed ID: 28204908
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]