577 related articles for article (PubMed ID: 29503869)
1. TADs are 3D structural units of higher-order chromosome organization in
Szabo Q; Jost D; Chang JM; Cattoni DI; Papadopoulos GL; Bonev B; Sexton T; Gurgo J; Jacquier C; Nollmann M; Bantignies F; Cavalli G
Sci Adv; 2018 Feb; 4(2):eaar8082. PubMed ID: 29503869
[TBL] [Abstract][Full Text] [Related]
2. Active chromatin and transcription play a key role in chromosome partitioning into topologically associating domains.
Ulianov SV; Khrameeva EE; Gavrilov AA; Flyamer IM; Kos P; Mikhaleva EA; Penin AA; Logacheva MD; Imakaev MV; Chertovich A; Gelfand MS; Shevelyov YY; Razin SV
Genome Res; 2016 Jan; 26(1):70-84. PubMed ID: 26518482
[TBL] [Abstract][Full Text] [Related]
3. 3D genome evolution and reorganization in the Drosophila melanogaster species group.
Torosin NS; Anand A; Golla TR; Cao W; Ellison CE
PLoS Genet; 2020 Dec; 16(12):e1009229. PubMed ID: 33284803
[TBL] [Abstract][Full Text] [Related]
4. Unraveling the mechanisms of chromatin fibril packaging.
Gavrilov AA; Shevelyov YY; Ulianov SV; Khrameeva EE; Kos P; Chertovich A; Razin SV
Nucleus; 2016 May; 7(3):319-24. PubMed ID: 27249516
[TBL] [Abstract][Full Text] [Related]
5. Order and stochasticity in the folding of individual Drosophila genomes.
Ulianov SV; Zakharova VV; Galitsyna AA; Kos PI; Polovnikov KE; Flyamer IM; Mikhaleva EA; Khrameeva EE; Germini D; Logacheva MD; Gavrilov AA; Gorsky AS; Nechaev SK; Gelfand MS; Vassetzky YS; Chertovich AV; Shevelyov YY; Razin SV
Nat Commun; 2021 Jan; 12(1):41. PubMed ID: 33397980
[TBL] [Abstract][Full Text] [Related]
6. High-resolution single-cell 3D-models of chromatin ensembles during Drosophila embryogenesis.
Sun Q; Perez-Rathke A; Czajkowsky DM; Shao Z; Liang J
Nat Commun; 2021 Jan; 12(1):205. PubMed ID: 33420075
[TBL] [Abstract][Full Text] [Related]
7. Regulation of single-cell genome organization into TADs and chromatin nanodomains.
Szabo Q; Donjon A; Jerković I; Papadopoulos GL; Cheutin T; Bonev B; Nora EP; Bruneau BG; Bantignies F; Cavalli G
Nat Genet; 2020 Nov; 52(11):1151-1157. PubMed ID: 33077913
[TBL] [Abstract][Full Text] [Related]
8. Quantitative differences in TAD border strength underly the TAD hierarchy in Drosophila chromosomes.
Luzhin AV; Flyamer IM; Khrameeva EE; Ulianov SV; Razin SV; Gavrilov AA
J Cell Biochem; 2019 Mar; 120(3):4494-4503. PubMed ID: 30260021
[TBL] [Abstract][Full Text] [Related]
9. Methods for the Analysis of Topologically Associating Domains (TADs).
Zufferey M; Tavernari D; Ciriello G
Methods Mol Biol; 2022; 2301():39-59. PubMed ID: 34415530
[TBL] [Abstract][Full Text] [Related]
10. Strong interactions between highly dynamic lamina-associated domains and the nuclear envelope stabilize the 3D architecture of Drosophila interphase chromatin.
Tolokh IS; Kinney NA; Sharakhov IV; Onufriev AV
Epigenetics Chromatin; 2023 May; 16(1):21. PubMed ID: 37254161
[TBL] [Abstract][Full Text] [Related]
11. Sub-kb Hi-C in D. melanogaster reveals conserved characteristics of TADs between insect and mammalian cells.
Wang Q; Sun Q; Czajkowsky DM; Shao Z
Nat Commun; 2018 Jan; 9(1):188. PubMed ID: 29335463
[TBL] [Abstract][Full Text] [Related]
12. Structural heterogeneity and functional diversity of topologically associating domains in mammalian genomes.
Wang XT; Dong PF; Zhang HY; Peng C
Nucleic Acids Res; 2015 Sep; 43(15):7237-46. PubMed ID: 26150425
[TBL] [Abstract][Full Text] [Related]
13. Topologically associating domains and their role in the evolution of genome structure and function in
Liao Y; Zhang X; Chakraborty M; Emerson JJ
Genome Res; 2021 Mar; 31(3):397-410. PubMed ID: 33563719
[TBL] [Abstract][Full Text] [Related]
14. Microscopy-Based Chromosome Conformation Capture Enables Simultaneous Visualization of Genome Organization and Transcription in Intact Organisms.
Cardozo Gizzi AM; Cattoni DI; Fiche JB; Espinola SM; Gurgo J; Messina O; Houbron C; Ogiyama Y; Papadopoulos GL; Cavalli G; Lagha M; Nollmann M
Mol Cell; 2019 Apr; 74(1):212-222.e5. PubMed ID: 30795893
[TBL] [Abstract][Full Text] [Related]
15. Evolutionary stability of topologically associating domains is associated with conserved gene regulation.
Krefting J; Andrade-Navarro MA; Ibn-Salem J
BMC Biol; 2018 Aug; 16(1):87. PubMed ID: 30086749
[TBL] [Abstract][Full Text] [Related]
16. TAD-like single-cell domain structures exist on both active and inactive X chromosomes and persist under epigenetic perturbations.
Cheng Y; Liu M; Hu M; Wang S
Genome Biol; 2021 Nov; 22(1):309. PubMed ID: 34749781
[TBL] [Abstract][Full Text] [Related]
17. Exploring the 2D and 3D structural properties of topologically associating domains.
Liu T; Wang Z
BMC Bioinformatics; 2019 Dec; 20(Suppl 16):592. PubMed ID: 31787081
[TBL] [Abstract][Full Text] [Related]
18. A comparison of topologically associating domain callers over mammals at high resolution.
Sefer E
BMC Bioinformatics; 2022 Apr; 23(1):127. PubMed ID: 35413815
[TBL] [Abstract][Full Text] [Related]
19. Mode and Tempo of 3D Genome Evolution in Drosophila.
Torosin NS; Golla TR; Lawlor MA; Cao W; Ellison CE
Mol Biol Evol; 2022 Nov; 39(11):. PubMed ID: 36201625
[TBL] [Abstract][Full Text] [Related]
20. Formation of new chromatin domains determines pathogenicity of genomic duplications.
Franke M; Ibrahim DM; Andrey G; Schwarzer W; Heinrich V; Schöpflin R; Kraft K; Kempfer R; Jerković I; Chan WL; Spielmann M; Timmermann B; Wittler L; Kurth I; Cambiaso P; Zuffardi O; Houge G; Lambie L; Brancati F; Pombo A; Vingron M; Spitz F; Mundlos S
Nature; 2016 Oct; 538(7624):265-269. PubMed ID: 27706140
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]