These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

273 related articles for article (PubMed ID: 29520628)

  • 1. Computed Free Energies of Peptide Insertion into Bilayers are Independent of Computational Method.
    Gumbart JC; Ulmschneider MB; Hazel A; White SH; Ulmschneider JP
    J Membr Biol; 2018 Jun; 251(3):345-356. PubMed ID: 29520628
    [TBL] [Abstract][Full Text] [Related]  

  • 2. In silico partitioning and transmembrane insertion of hydrophobic peptides under equilibrium conditions.
    Ulmschneider JP; Smith JC; White SH; Ulmschneider MB
    J Am Chem Soc; 2011 Oct; 133(39):15487-95. PubMed ID: 21861483
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Evaluating Force Fields for the Computational Prediction of Ionized Arginine and Lysine Side-Chains Partitioning into Lipid Bilayers and Octanol.
    Sun D; Forsman J; Woodward CE
    J Chem Theory Comput; 2015 Apr; 11(4):1775-91. PubMed ID: 26574387
    [TBL] [Abstract][Full Text] [Related]  

  • 4. The importance of the membrane interface as the reference state for membrane protein stability.
    Ulmschneider JP; Smith JC; White SH; Ulmschneider MB
    Biochim Biophys Acta Biomembr; 2018 Dec; 1860(12):2539-2548. PubMed ID: 30293965
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Potential of mean force analysis of the self-association of leucine-rich transmembrane α-helices: difference between atomistic and coarse-grained simulations.
    Nishizawa M; Nishizawa K
    J Chem Phys; 2014 Aug; 141(7):075101. PubMed ID: 25149815
    [TBL] [Abstract][Full Text] [Related]  

  • 6. The importance of membrane defects-lessons from simulations.
    Bennett WF; Tieleman DP
    Acc Chem Res; 2014 Aug; 47(8):2244-51. PubMed ID: 24892900
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Efficient Quantification of Lipid Packing Defect Sensing by Amphipathic Peptides: Comparing Martini 2 and 3 with CHARMM36.
    van Hilten N; Stroh KS; Risselada HJ
    J Chem Theory Comput; 2022 Jul; 18(7):4503-4514. PubMed ID: 35709386
    [TBL] [Abstract][Full Text] [Related]  

  • 8. The energetics of transmembrane helix insertion into a lipid bilayer.
    Chetwynd A; Wee CL; Hall BA; Sansom MS
    Biophys J; 2010 Oct; 99(8):2534-40. PubMed ID: 20959094
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Arginine in membranes: the connection between molecular dynamics simulations and translocon-mediated insertion experiments.
    Schow EV; Freites JA; Myint PC; Bernsel A; von Heijne G; White SH; Tobias DJ
    J Membr Biol; 2011 Jan; 239(1-2):35-48. PubMed ID: 21127848
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Translocation thermodynamics of linear and cyclic nonaarginine into model DPPC bilayer via coarse-grained molecular dynamics simulation: implications of pore formation and nonadditivity.
    Hu Y; Liu X; Sinha SK; Patel S
    J Phys Chem B; 2014 Mar; 118(10):2670-82. PubMed ID: 24506488
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Transmembrane helices containing a charged arginine are thermodynamically stable.
    Ulmschneider MB; Ulmschneider JP; Freites JA; von Heijne G; Tobias DJ; White SH
    Eur Biophys J; 2017 Oct; 46(7):627-637. PubMed ID: 28409218
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Antimicrobial Peptide Simulations and the Influence of Force Field on the Free Energy for Pore Formation in Lipid Bilayers.
    Bennett WF; Hong CK; Wang Y; Tieleman DP
    J Chem Theory Comput; 2016 Sep; 12(9):4524-33. PubMed ID: 27529120
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Quantitative Characterization of Protein-Lipid Interactions by Free Energy Simulation between Binary Bilayers.
    Park S; Yeom MS; Andersen OS; Pastor RW; Im W
    J Chem Theory Comput; 2019 Nov; 15(11):6491-6503. PubMed ID: 31560853
    [TBL] [Abstract][Full Text] [Related]  

  • 14. All-atom simulations and free-energy calculations of coiled-coil peptides with lipid bilayers: binding strength, structural transition, and effect on lipid dynamics.
    Woo SY; Lee H
    Sci Rep; 2016 Mar; 6():22299. PubMed ID: 26926570
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Estimating the Lipophobic Contributions in Model Membranes.
    Dubey V; Prasanna X; Sengupta D
    J Phys Chem B; 2017 Mar; 121(9):2111-2120. PubMed ID: 28186760
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Mechanism and kinetics of peptide partitioning into membranes from all-atom simulations of thermostable peptides.
    Ulmschneider MB; Doux JP; Killian JA; Smith JC; Ulmschneider JP
    J Am Chem Soc; 2010 Mar; 132(10):3452-60. PubMed ID: 20163187
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Thermodynamic analysis of protegrin-1 insertion and permeation through a lipid bilayer.
    Vivcharuk V; Kaznessis YN
    J Phys Chem B; 2011 Dec; 115(49):14704-12. PubMed ID: 22044268
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Determining peptide partitioning properties via computer simulation.
    Ulmschneider JP; Andersson M; Ulmschneider MB
    J Membr Biol; 2011 Jan; 239(1-2):15-26. PubMed ID: 21107546
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Outer membrane phospholipase A in phospholipid bilayers: a model system for concerted computational and experimental investigations of amino acid side chain partitioning into lipid bilayers.
    Fleming PJ; Freites JA; Moon CP; Tobias DJ; Fleming KG
    Biochim Biophys Acta; 2012 Feb; 1818(2):126-34. PubMed ID: 21816133
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Thermodynamics of cell-penetrating HIV1 TAT peptide insertion into PC/PS/CHOL model bilayers through transmembrane pores: the roles of cholesterol and anionic lipids.
    Hu Y; Patel S
    Soft Matter; 2016 Aug; 12(32):6716-27. PubMed ID: 27435187
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 14.