These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
3. FaStore: a space-saving solution for raw sequencing data. Roguski L; Ochoa I; Hernaez M; Deorowicz S Bioinformatics; 2018 Aug; 34(16):2748-2756. PubMed ID: 29617939 [TBL] [Abstract][Full Text] [Related]
4. ANAQUIN: a software toolkit for the analysis of spike-in controls for next generation sequencing. Wong T; Deveson IW; Hardwick SA; Mercer TR Bioinformatics; 2017 Jun; 33(11):1723-1724. PubMed ID: 28130232 [TBL] [Abstract][Full Text] [Related]
5. E2FM: an encrypted and compressed full-text index for collections of genomic sequences. Montecuollo F; Schmid G; Tagliaferri R Bioinformatics; 2017 Sep; 33(18):2808-2817. PubMed ID: 28498928 [TBL] [Abstract][Full Text] [Related]
6. PAIPline: pathogen identification in metagenomic and clinical next generation sequencing samples. Andrusch A; Dabrowski PW; Klenner J; Tausch SH; Kohl C; Osman AA; Renard BY; Nitsche A Bioinformatics; 2018 Sep; 34(17):i715-i721. PubMed ID: 30423069 [TBL] [Abstract][Full Text] [Related]
7. ViraPipe: scalable parallel pipeline for viral metagenome analysis from next generation sequencing reads. Maarala AI; Bzhalava Z; Dillner J; Heljanko K; Bzhalava D Bioinformatics; 2018 Mar; 34(6):928-935. PubMed ID: 29106455 [TBL] [Abstract][Full Text] [Related]
9. A space and time-efficient index for the compacted colored de Bruijn graph. Almodaresi F; Sarkar H; Srivastava A; Patro R Bioinformatics; 2018 Jul; 34(13):i169-i177. PubMed ID: 29949982 [TBL] [Abstract][Full Text] [Related]
10. Simulating the dynamics of targeted capture sequencing with CapSim. Cao MD; Ganesamoorthy D; Zhou C; Coin LJM Bioinformatics; 2018 Mar; 34(5):873-874. PubMed ID: 29092025 [TBL] [Abstract][Full Text] [Related]
11. VIPER: a web application for rapid expert review of variant calls. Wöste M; Dugas M Bioinformatics; 2018 Jun; 34(11):1928-1929. PubMed ID: 29346510 [TBL] [Abstract][Full Text] [Related]
12. Accurate filtering of privacy-sensitive information in raw genomic data. Decouchant J; Fernandes M; Völp M; Couto FM; Esteves-Veríssimo P J Biomed Inform; 2018 Jun; 82():1-12. PubMed ID: 29660494 [TBL] [Abstract][Full Text] [Related]