These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

365 related articles for article (PubMed ID: 29534152)

  • 1. NGSphy: phylogenomic simulation of next-generation sequencing data.
    Escalona M; Rocha S; Posada D
    Bioinformatics; 2018 Jul; 34(14):2506-2507. PubMed ID: 29534152
    [TBL] [Abstract][Full Text] [Related]  

  • 2. pIRS: Profile-based Illumina pair-end reads simulator.
    Hu X; Yuan J; Shi Y; Lu J; Liu B; Li Z; Chen Y; Mu D; Zhang H; Li N; Yue Z; Bai F; Li H; Fan W
    Bioinformatics; 2012 Jun; 28(11):1533-5. PubMed ID: 22508794
    [TBL] [Abstract][Full Text] [Related]  

  • 3. jackalope: A swift, versatile phylogenomic and high-throughput sequencing simulator.
    Nell LA
    Mol Ecol Resour; 2020 Jul; 20(4):1132-1140. PubMed ID: 32320523
    [TBL] [Abstract][Full Text] [Related]  

  • 4. VarSim: a high-fidelity simulation and validation framework for high-throughput genome sequencing with cancer applications.
    Mu JC; Mohiyuddin M; Li J; Bani Asadi N; Gerstein MB; Abyzov A; Wong WH; Lam HY
    Bioinformatics; 2015 May; 31(9):1469-71. PubMed ID: 25524895
    [TBL] [Abstract][Full Text] [Related]  

  • 5. One Size Doesn't Fit All - RefEditor: Building Personalized Diploid Reference Genome to Improve Read Mapping and Genotype Calling in Next Generation Sequencing Studies.
    Yuan S; Johnston HR; Zhang G; Li Y; Hu YJ; Qin ZS
    PLoS Comput Biol; 2015 Aug; 11(8):e1004448. PubMed ID: 26267278
    [TBL] [Abstract][Full Text] [Related]  

  • 6. ARCS: scaffolding genome drafts with linked reads.
    Yeo S; Coombe L; Warren RL; Chu J; Birol I
    Bioinformatics; 2018 Mar; 34(5):725-731. PubMed ID: 29069293
    [TBL] [Abstract][Full Text] [Related]  

  • 7. scanPAV: a pipeline for extracting presence-absence variations in genome pairs.
    Giordano F; Stammnitz MR; Murchison EP; Ning Z
    Bioinformatics; 2018 Sep; 34(17):3022-3024. PubMed ID: 29608694
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Group-based variant calling leveraging next-generation supercomputing for large-scale whole-genome sequencing studies.
    Standish KA; Carland TM; Lockwood GK; Pfeiffer W; Tatineni M; Huang CC; Lamberth S; Cherkas Y; Brodmerkel C; Jaeger E; Smith L; Rajagopal G; Curran ME; Schork NJ
    BMC Bioinformatics; 2015 Sep; 16(1):304. PubMed ID: 26395405
    [TBL] [Abstract][Full Text] [Related]  

  • 9. aTRAM - automated target restricted assembly method: a fast method for assembling loci across divergent taxa from next-generation sequencing data.
    Allen JM; Huang DI; Cronk QC; Johnson KP
    BMC Bioinformatics; 2015 Mar; 16(1):98. PubMed ID: 25887972
    [TBL] [Abstract][Full Text] [Related]  

  • 10. MsPAC: a tool for haplotype-phased structural variant detection.
    Rodriguez OL; Ritz A; Sharp AJ; Bashir A
    Bioinformatics; 2020 Feb; 36(3):922-924. PubMed ID: 31397844
    [TBL] [Abstract][Full Text] [Related]  

  • 11. NeatFreq: reference-free data reduction and coverage normalization for De Novo sequence assembly.
    McCorrison JM; Venepally P; Singh I; Fouts DE; Lasken RS; Methé BA
    BMC Bioinformatics; 2014 Nov; 15(1):357. PubMed ID: 25407910
    [TBL] [Abstract][Full Text] [Related]  

  • 12. A comparative study of k-spectrum-based error correction methods for next-generation sequencing data analysis.
    Akogwu I; Wang N; Zhang C; Gong P
    Hum Genomics; 2016 Jul; 10 Suppl 2(Suppl 2):20. PubMed ID: 27461106
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Subset selection of high-depth next generation sequencing reads for de novo genome assembly using MapReduce framework.
    Fang CH; Chang YJ; Chung WC; Hsieh PH; Lin CY; Ho JM
    BMC Genomics; 2015; 16 Suppl 12(Suppl 12):S9. PubMed ID: 26678408
    [TBL] [Abstract][Full Text] [Related]  

  • 14. SimLoRD: Simulation of Long Read Data.
    Stöcker BK; Köster J; Rahmann S
    Bioinformatics; 2016 Sep; 32(17):2704-6. PubMed ID: 27166244
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Improving the sensitivity of long read overlap detection using grouped short k-mer matches.
    Du N; Chen J; Sun Y
    BMC Genomics; 2019 Apr; 20(Suppl 2):190. PubMed ID: 30967123
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Simulating the dynamics of targeted capture sequencing with CapSim.
    Cao MD; Ganesamoorthy D; Zhou C; Coin LJM
    Bioinformatics; 2018 Mar; 34(5):873-874. PubMed ID: 29092025
    [TBL] [Abstract][Full Text] [Related]  

  • 17. HaploMerger2: rebuilding both haploid sub-assemblies from high-heterozygosity diploid genome assembly.
    Huang S; Kang M; Xu A
    Bioinformatics; 2017 Aug; 33(16):2577-2579. PubMed ID: 28407147
    [TBL] [Abstract][Full Text] [Related]  

  • 18. CSAR: a contig scaffolding tool using algebraic rearrangements.
    Chen KT; Liu CL; Huang SH; Shen HT; Shieh YK; Chiu HT; Lu CL
    Bioinformatics; 2018 Jan; 34(1):109-111. PubMed ID: 28968788
    [TBL] [Abstract][Full Text] [Related]  

  • 19. QuorUM: An Error Corrector for Illumina Reads.
    Marçais G; Yorke JA; Zimin A
    PLoS One; 2015; 10(6):e0130821. PubMed ID: 26083032
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Compression of genomic sequencing reads via hash-based reordering: algorithm and analysis.
    Chandak S; Tatwawadi K; Weissman T
    Bioinformatics; 2018 Feb; 34(4):558-567. PubMed ID: 29444237
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 19.