1447 related articles for article (PubMed ID: 29554948)
1. Species classifier choice is a key consideration when analysing low-complexity food microbiome data.
Walsh AM; Crispie F; O'Sullivan O; Finnegan L; Claesson MJ; Cotter PD
Microbiome; 2018 Mar; 6(1):50. PubMed ID: 29554948
[TBL] [Abstract][Full Text] [Related]
2. MinION™ nanopore sequencing of environmental metagenomes: a synthetic approach.
Brown BL; Watson M; Minot SS; Rivera MC; Franklin RB
Gigascience; 2017 Mar; 6(3):1-10. PubMed ID: 28327976
[TBL] [Abstract][Full Text] [Related]
3. Optimisation of methods for bacterial skin microbiome investigation: primer selection and comparison of the 454 versus MiSeq platform.
Castelino M; Eyre S; Moat J; Fox G; Martin P; Ho P; Upton M; Barton A
BMC Microbiol; 2017 Jan; 17(1):23. PubMed ID: 28109256
[TBL] [Abstract][Full Text] [Related]
4. A comparison of sequencing platforms and bioinformatics pipelines for compositional analysis of the gut microbiome.
Allali I; Arnold JW; Roach J; Cadenas MB; Butz N; Hassan HM; Koci M; Ballou A; Mendoza M; Ali R; Azcarate-Peril MA
BMC Microbiol; 2017 Sep; 17(1):194. PubMed ID: 28903732
[TBL] [Abstract][Full Text] [Related]
5. Different next generation sequencing platforms produce different microbial profiles and diversity in cystic fibrosis sputum.
Hahn A; Sanyal A; Perez GF; Colberg-Poley AM; Campos J; Rose MC; Pérez-Losada M
J Microbiol Methods; 2016 Nov; 130():95-99. PubMed ID: 27609714
[TBL] [Abstract][Full Text] [Related]
6. Analysis of the microbiome: Advantages of whole genome shotgun versus 16S amplicon sequencing.
Ranjan R; Rani A; Metwally A; McGee HS; Perkins DL
Biochem Biophys Res Commun; 2016 Jan; 469(4):967-77. PubMed ID: 26718401
[TBL] [Abstract][Full Text] [Related]
7. A comprehensive investigation of metagenome assembly by linked-read sequencing.
Zhang L; Fang X; Liao H; Zhang Z; Zhou X; Han L; Chen Y; Qiu Q; Li SC
Microbiome; 2020 Nov; 8(1):156. PubMed ID: 33176883
[TBL] [Abstract][Full Text] [Related]
8. Species-level bacterial community profiling of the healthy sinonasal microbiome using Pacific Biosciences sequencing of full-length 16S rRNA genes.
Earl JP; Adappa ND; Krol J; Bhat AS; Balashov S; Ehrlich RL; Palmer JN; Workman AD; Blasetti M; Sen B; Hammond J; Cohen NA; Ehrlich GD; Mell JC
Microbiome; 2018 Oct; 6(1):190. PubMed ID: 30352611
[TBL] [Abstract][Full Text] [Related]
9. Deciphering intra-species bacterial diversity of meat and seafood spoilage microbiota using gyrB amplicon sequencing: A comparative analysis with 16S rDNA V3-V4 amplicon sequencing.
Poirier S; Rué O; Peguilhan R; Coeuret G; Zagorec M; Champomier-Vergès MC; Loux V; Chaillou S
PLoS One; 2018; 13(9):e0204629. PubMed ID: 30252901
[TBL] [Abstract][Full Text] [Related]
10. Long-read based de novo assembly of low-complexity metagenome samples results in finished genomes and reveals insights into strain diversity and an active phage system.
Somerville V; Lutz S; Schmid M; Frei D; Moser A; Irmler S; Frey JE; Ahrens CH
BMC Microbiol; 2019 Jun; 19(1):143. PubMed ID: 31238873
[TBL] [Abstract][Full Text] [Related]
11. Characterization and Demonstration of Mock Communities as Control Reagents for Accurate Human Microbiome Community Measurements.
Tourlousse DM; Narita K; Miura T; Ohashi A; Matsuda M; Ohyama Y; Shimamura M; Furukawa M; Kasahara K; Kameyama K; Saito S; Goto M; Shimizu R; Mishima R; Nakayama J; Hosomi K; Kunisawa J; Terauchi J; Sekiguchi Y; Kawasaki H
Microbiol Spectr; 2022 Apr; 10(2):e0191521. PubMed ID: 35234490
[TBL] [Abstract][Full Text] [Related]
12. A bioinformatics pipeline integrating predictive metagenomics profiling for the analysis of 16S rDNA/rRNA sequencing data originated from foods.
Mataragas M; Alessandria V; Ferrocino I; Rantsiou K; Cocolin L
Food Microbiol; 2018 Dec; 76():279-286. PubMed ID: 30166151
[TBL] [Abstract][Full Text] [Related]
13. Microbial community analysis using high-throughput sequencing technology: a beginner's guide for microbiologists.
Jo J; Oh J; Park C
J Microbiol; 2020 Mar; 58(3):176-192. PubMed ID: 32108314
[TBL] [Abstract][Full Text] [Related]
14. A novel ultra high-throughput 16S rRNA gene amplicon sequencing library preparation method for the Illumina HiSeq platform.
de Muinck EJ; Trosvik P; Gilfillan GD; Hov JR; Sundaram AYM
Microbiome; 2017 Jul; 5(1):68. PubMed ID: 28683838
[TBL] [Abstract][Full Text] [Related]
15. Quantitative Assessment of Shotgun Metagenomics and 16S rDNA Amplicon Sequencing in the Study of Human Gut Microbiome.
Laudadio I; Fulci V; Palone F; Stronati L; Cucchiara S; Carissimi C
OMICS; 2018 Apr; 22(4):248-254. PubMed ID: 29652573
[TBL] [Abstract][Full Text] [Related]
16. Bioinformatic strategies to address limitations of 16rRNA short-read amplicons from different sequencing platforms.
Bailén M; Bressa C; Larrosa M; González-Soltero R
J Microbiol Methods; 2020 Feb; 169():105811. PubMed ID: 31857143
[TBL] [Abstract][Full Text] [Related]
17. Comparing Apples and Oranges?: Next Generation Sequencing and Its Impact on Microbiome Analysis.
Clooney AG; Fouhy F; Sleator RD; O' Driscoll A; Stanton C; Cotter PD; Claesson MJ
PLoS One; 2016; 11(2):e0148028. PubMed ID: 26849217
[TBL] [Abstract][Full Text] [Related]
18. Comparison of Illumina versus Nanopore 16S rRNA Gene Sequencing of the Human Nasal Microbiota.
Heikema AP; Horst-Kreft D; Boers SA; Jansen R; Hiltemann SD; de Koning W; Kraaij R; de Ridder MAJ; van Houten CB; Bont LJ; Stubbs AP; Hays JP
Genes (Basel); 2020 Sep; 11(9):. PubMed ID: 32967250
[TBL] [Abstract][Full Text] [Related]
19. Critical steps in clinical shotgun metagenomics for the concomitant detection and typing of microbial pathogens.
Couto N; Schuele L; Raangs EC; Machado MP; Mendes CI; Jesus TF; Chlebowicz M; Rosema S; Ramirez M; Carriço JA; Autenrieth IB; Friedrich AW; Peter S; Rossen JW
Sci Rep; 2018 Sep; 8(1):13767. PubMed ID: 30213965
[TBL] [Abstract][Full Text] [Related]
20. The truth about metagenomics: quantifying and counteracting bias in 16S rRNA studies.
Brooks JP; Edwards DJ; Harwich MD; Rivera MC; Fettweis JM; Serrano MG; Reris RA; Sheth NU; Huang B; Girerd P; ; Strauss JF; Jefferson KK; Buck GA
BMC Microbiol; 2015 Mar; 15():66. PubMed ID: 25880246
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
