These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

192 related articles for article (PubMed ID: 29559002)

  • 1. FusorSV: an algorithm for optimally combining data from multiple structural variation detection methods.
    Becker T; Lee WP; Leone J; Zhu Q; Zhang C; Liu S; Sargent J; Shanker K; Mil-Homens A; Cerveira E; Ryan M; Cha J; Navarro FCP; Galeev T; Gerstein M; Mills RE; Shin DG; Lee C; Malhotra A
    Genome Biol; 2018 Mar; 19(1):38. PubMed ID: 29559002
    [TBL] [Abstract][Full Text] [Related]  

  • 2. RAPTR-SV: a hybrid method for the detection of structural variants.
    Bickhart DM; Hutchison JL; Xu L; Schnabel RD; Taylor JF; Reecy JM; Schroeder S; Van Tassell CP; Sonstegard TS; Liu GE
    Bioinformatics; 2015 Jul; 31(13):2084-90. PubMed ID: 25686638
    [TBL] [Abstract][Full Text] [Related]  

  • 3. SVmine improves structural variation detection by integrative mining of predictions from multiple algorithms.
    Xia Y; Liu Y; Deng M; Xi R
    Bioinformatics; 2017 Nov; 33(21):3348-3354. PubMed ID: 29036467
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Comprehensive evaluation of structural variation detection algorithms for whole genome sequencing.
    Kosugi S; Momozawa Y; Liu X; Terao C; Kubo M; Kamatani Y
    Genome Biol; 2019 Jun; 20(1):117. PubMed ID: 31159850
    [TBL] [Abstract][Full Text] [Related]  

  • 5. A recurrence-based approach for validating structural variation using long-read sequencing technology.
    Zhao X; Weber AM; Mills RE
    Gigascience; 2017 Aug; 6(8):1-9. PubMed ID: 28873962
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Structural Variant Detection from Long-Read Sequencing Data with cuteSV.
    Jiang T; Liu S; Cao S; Wang Y
    Methods Mol Biol; 2022; 2493():137-151. PubMed ID: 35751813
    [TBL] [Abstract][Full Text] [Related]  

  • 7. svclassify: a method to establish benchmark structural variant calls.
    Parikh H; Mohiyuddin M; Lam HY; Iyer H; Chen D; Pratt M; Bartha G; Spies N; Losert W; Zook JM; Salit M
    BMC Genomics; 2016 Jan; 17():64. PubMed ID: 26772178
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Comparison of multiple algorithms to reliably detect structural variants in pears.
    Liu Y; Zhang M; Sun J; Chang W; Sun M; Zhang S; Wu J
    BMC Genomics; 2020 Jan; 21(1):61. PubMed ID: 31959124
    [TBL] [Abstract][Full Text] [Related]  

  • 9. SVPV: a structural variant prediction viewer for paired-end sequencing datasets.
    Munro JE; Dunwoodie SL; Giannoulatou E
    Bioinformatics; 2017 Jul; 33(13):2032-2033. PubMed ID: 28334120
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Meltos: multi-sample tumor phylogeny reconstruction for structural variants.
    Ricketts C; Seidman D; Popic V; Hormozdiari F; Batzoglou S; Hajirasouliha I
    Bioinformatics; 2020 Feb; 36(4):1082-1090. PubMed ID: 31584621
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Structural variant analysis of a cancer reference cell line sample using multiple sequencing technologies.
    Talsania K; Shen TW; Chen X; Jaeger E; Li Z; Chen Z; Chen W; Tran B; Kusko R; Wang L; Pang AWC; Yang Z; Choudhari S; Colgan M; Fang LT; Carroll A; Shetty J; Kriga Y; German O; Smirnova T; Liu T; Li J; Kellman B; Hong K; Hastie AR; Natarajan A; Moshrefi A; Granat A; Truong T; Bombardi R; Mankinen V; Meerzaman D; Mason CE; Collins J; Stahlberg E; Xiao C; Wang C; Xiao W; Zhao Y
    Genome Biol; 2022 Dec; 23(1):255. PubMed ID: 36514120
    [TBL] [Abstract][Full Text] [Related]  

  • 12. ProcaryaSV: structural variation detection pipeline for bacterial genomes using short-read sequencing.
    Jugas R; Vitkova H
    BMC Bioinformatics; 2024 Jul; 25(1):233. PubMed ID: 38982375
    [TBL] [Abstract][Full Text] [Related]  

  • 13. PerSVade: personalized structural variant detection in any species of interest.
    Schikora-Tamarit MÀ; Gabaldón T
    Genome Biol; 2022 Aug; 23(1):175. PubMed ID: 35974382
    [TBL] [Abstract][Full Text] [Related]  

  • 14. SV2: accurate structural variation genotyping and de novo mutation detection from whole genomes.
    Antaki D; Brandler WM; Sebat J
    Bioinformatics; 2018 May; 34(10):1774-1777. PubMed ID: 29300834
    [TBL] [Abstract][Full Text] [Related]  

  • 15. iSVP: an integrated structural variant calling pipeline from high-throughput sequencing data.
    Mimori T; Nariai N; Kojima K; Takahashi M; Ono A; Sato Y; Yamaguchi-Kabata Y; Nagasaki M
    BMC Syst Biol; 2013; 7 Suppl 6(Suppl 6):S8. PubMed ID: 24564972
    [TBL] [Abstract][Full Text] [Related]  

  • 16. SVDF: enhancing structural variation detect from long-read sequencing via automatic filtering strategies.
    Hu H; Gao R; Gao W; Gao B; Jiang Z; Zhou M; Wang G; Jiang T
    Brief Bioinform; 2024 May; 25(4):. PubMed ID: 38980375
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Structural variant identification and characterization.
    Balachandran P; Beck CR
    Chromosome Res; 2020 Mar; 28(1):31-47. PubMed ID: 31907725
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Detecting genomic deletions from high-throughput sequence data with unsupervised learning.
    Li X; Wu Y
    BMC Bioinformatics; 2023 Jan; 23(Suppl 8):568. PubMed ID: 36707775
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Small polymorphisms are a source of ancestral bias in structural variant breakpoint placement.
    Audano PA; Beck CR
    Genome Res; 2024 Feb; 34(1):7-19. PubMed ID: 38176712
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Multi-platform discovery of haplotype-resolved structural variation in human genomes.
    Chaisson MJP; Sanders AD; Zhao X; Malhotra A; Porubsky D; Rausch T; Gardner EJ; Rodriguez OL; Guo L; Collins RL; Fan X; Wen J; Handsaker RE; Fairley S; Kronenberg ZN; Kong X; Hormozdiari F; Lee D; Wenger AM; Hastie AR; Antaki D; Anantharaman T; Audano PA; Brand H; Cantsilieris S; Cao H; Cerveira E; Chen C; Chen X; Chin CS; Chong Z; Chuang NT; Lambert CC; Church DM; Clarke L; Farrell A; Flores J; Galeev T; Gorkin DU; Gujral M; Guryev V; Heaton WH; Korlach J; Kumar S; Kwon JY; Lam ET; Lee JE; Lee J; Lee WP; Lee SP; Li S; Marks P; Viaud-Martinez K; Meiers S; Munson KM; Navarro FCP; Nelson BJ; Nodzak C; Noor A; Kyriazopoulou-Panagiotopoulou S; Pang AWC; Qiu Y; Rosanio G; Ryan M; Stütz A; Spierings DCJ; Ward A; Welch AE; Xiao M; Xu W; Zhang C; Zhu Q; Zheng-Bradley X; Lowy E; Yakneen S; McCarroll S; Jun G; Ding L; Koh CL; Ren B; Flicek P; Chen K; Gerstein MB; Kwok PY; Lansdorp PM; Marth GT; Sebat J; Shi X; Bashir A; Ye K; Devine SE; Talkowski ME; Mills RE; Marschall T; Korbel JO; Eichler EE; Lee C
    Nat Commun; 2019 Apr; 10(1):1784. PubMed ID: 30992455
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 10.