These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

120 related articles for article (PubMed ID: 29559729)

  • 1. Quantifying the impact of simple DNA parameters on the cyclization J-factor for single-basepair-addition families.
    Tong Y; Manning RS
    Sci Rep; 2018 Mar; 8(1):4882. PubMed ID: 29559729
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Measurement of the DNA bend angle induced by the catabolite activator protein using Monte Carlo simulation of cyclization kinetics.
    Kahn JD; Crothers DM
    J Mol Biol; 1998 Feb; 276(1):287-309. PubMed ID: 9514724
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Statistical mechanics of sequence-dependent circular DNA and its application for DNA cyclization.
    Zhang Y; Crothers DM
    Biophys J; 2003 Jan; 84(1):136-53. PubMed ID: 12524271
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Ring closure probabilities for DNA fragments by Monte Carlo simulation.
    Levene SD; Crothers DM
    J Mol Biol; 1986 May; 189(1):61-72. PubMed ID: 3783680
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Identifying Physical Causes of Apparent Enhanced Cyclization of Short DNA Molecules with a Coarse-Grained Model.
    Harrison RM; Romano F; Ouldridge TE; Louis AA; Doye JPK
    J Chem Theory Comput; 2019 Aug; 15(8):4660-4672. PubMed ID: 31282669
    [TBL] [Abstract][Full Text] [Related]  

  • 6. J-factors of short DNA molecules.
    Zoli M
    J Chem Phys; 2016 Jun; 144(21):214104. PubMed ID: 27276942
    [TBL] [Abstract][Full Text] [Related]  

  • 7. DNA bending, flexibility, and helical repeat by cyclization kinetics.
    Crothers DM; Drak J; Kahn JD; Levene SD
    Methods Enzymol; 1992; 212():3-29. PubMed ID: 1518450
    [No Abstract]   [Full Text] [Related]  

  • 8. Local sequential minimization of double stranded B-DNA using Monte Carlo annealing.
    Sfyrakis K; Provata A; Povey DC; Howlin BJ
    J Mol Model; 2004 Jun; 10(3):185-97. PubMed ID: 15042433
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Application of the method of phage T4 DNA ligase-catalyzed ring-closure to the study of DNA structure. I. Computational analysis.
    Hagerman PJ; Ramadevi VA
    J Mol Biol; 1990 Mar; 212(2):351-62. PubMed ID: 2319603
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Bending and flexibility of methylated and unmethylated EcoRI DNA.
    Nathan D; Crothers DM
    J Mol Biol; 2002 Feb; 316(1):7-17. PubMed ID: 11829499
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Multimerization-cyclization of DNA fragments as a method of conformational analysis.
    Podtelezhnikov AA; Mao C; Seeman NC; Vologodskii A
    Biophys J; 2000 Nov; 79(5):2692-704. PubMed ID: 11053141
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Contribution of nonlocal interactions to DNA elasticity.
    Eslami-Mossallam B; Ejtehadi MR
    J Chem Phys; 2011 Mar; 134(12):125106. PubMed ID: 21456706
    [TBL] [Abstract][Full Text] [Related]  

  • 13. DNA cyclization and looping in the wormlike limit: Normal modes and the validity of the harmonic approximation.
    Giovan SM; Hanke A; Levene SD
    Biopolymers; 2015 Sep; 103(9):528-38. PubMed ID: 26014845
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Extreme bendability of DNA double helix due to bending asymmetry.
    Salari H; Eslami-Mossallam B; Naderi S; Ejtehadi MR
    J Chem Phys; 2015 Sep; 143(10):104904. PubMed ID: 26374059
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Energetics of DNA twisting. I. Relation between twist and cyclization probability.
    Shore D; Baldwin RL
    J Mol Biol; 1983 Nov; 170(4):957-81. PubMed ID: 6315955
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Stiffer double-stranded DNA in two-dimensional confinement due to bending anisotropy.
    Salari H; Eslami-Mossallam B; Ranjbar HF; Ejtehadi MR
    Phys Rev E; 2016 Dec; 94(6-1):062407. PubMed ID: 28085439
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Gapped DNA and cyclization of short DNA fragments.
    Du Q; Vologodskaia M; Kuhn H; Frank-Kamenetskii M; Vologodskii A
    Biophys J; 2005 Jun; 88(6):4137-45. PubMed ID: 15778443
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Detection of localized DNA flexibility.
    Kahn JD; Yun E; Crothers DM
    Nature; 1994 Mar; 368(6467):163-6. PubMed ID: 8139661
    [TBL] [Abstract][Full Text] [Related]  

  • 19. From rigid base pairs to semiflexible polymers: coarse-graining DNA.
    Becker NB; Everaers R
    Phys Rev E Stat Nonlin Soft Matter Phys; 2007 Aug; 76(2 Pt 1):021923. PubMed ID: 17930081
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Protein-induced bending and DNA cyclization.
    Kahn JD; Crothers DM
    Proc Natl Acad Sci U S A; 1992 Jul; 89(14):6343-7. PubMed ID: 1321436
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 6.