BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

119 related articles for article (PubMed ID: 29564822)

  • 1. RNA-Seq Analysis to Detect Abnormal Fusion Transcripts Linked to Chromothripsis.
    Bougé AL; Rufflé F; Riquier S; Guibert B; Audoux J; Commes T
    Methods Mol Biol; 2018; 1769():133-156. PubMed ID: 29564822
    [TBL] [Abstract][Full Text] [Related]  

  • 2. ChimPipe: accurate detection of fusion genes and transcription-induced chimeras from RNA-seq data.
    Rodríguez-Martín B; Palumbo E; Marco-Sola S; Griebel T; Ribeca P; Alonso G; Rastrojo A; Aguado B; Guigó R; Djebali S
    BMC Genomics; 2017 Jan; 18(1):7. PubMed ID: 28049418
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Identification of Chimeric RNAs Using RNA-Seq Reads and Protein-Protein Interactions of Translated Chimeras.
    Frenkel-Morgenstern M
    Methods Mol Biol; 2020; 2079():27-40. PubMed ID: 31728960
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Case Study: Systematic Detection and Prioritization of Gene Fusions in Cancer by RNA-Seq: A DIY Toolkit.
    Vats P; Chinnaiyan AM; Kumar-Sinha C
    Methods Mol Biol; 2020; 2079():69-79. PubMed ID: 31728962
    [TBL] [Abstract][Full Text] [Related]  

  • 5. InFusion: Advancing Discovery of Fusion Genes and Chimeric Transcripts from Deep RNA-Sequencing Data.
    Okonechnikov K; Imai-Matsushima A; Paul L; Seitz A; Meyer TF; Garcia-Alcalde F
    PLoS One; 2016; 11(12):e0167417. PubMed ID: 27907167
    [TBL] [Abstract][Full Text] [Related]  

  • 6. GRO-seq, A Tool for Identification of Transcripts Regulating Gene Expression.
    Lopes R; Agami R; Korkmaz G
    Methods Mol Biol; 2017; 1543():45-55. PubMed ID: 28349421
    [TBL] [Abstract][Full Text] [Related]  

  • 7. SPARTA: Simple Program for Automated reference-based bacterial RNA-seq Transcriptome Analysis.
    Johnson BK; Scholz MB; Teal TK; Abramovitch RB
    BMC Bioinformatics; 2016 Feb; 17():66. PubMed ID: 26847232
    [TBL] [Abstract][Full Text] [Related]  

  • 8. RAP: RNA-Seq Analysis Pipeline, a new cloud-based NGS web application.
    D'Antonio M; D'Onorio De Meo P; Pallocca M; Picardi E; D'Erchia AM; Calogero RA; Castrignanò T; Pesole G
    BMC Genomics; 2015; 16(Suppl 6):S3. PubMed ID: 26046471
    [TBL] [Abstract][Full Text] [Related]  

  • 9. RNA Sequencing and Analysis.
    Kukurba KR; Montgomery SB
    Cold Spring Harb Protoc; 2015 Apr; 2015(11):951-69. PubMed ID: 25870306
    [TBL] [Abstract][Full Text] [Related]  

  • 10. RNA-Seq Experiment and Data Analysis.
    Liang H; Zeng E
    Methods Mol Biol; 2016; 1366():99-114. PubMed ID: 26585130
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Discovering chimeric transcripts in paired-end RNA-seq data by using EricScript.
    Benelli M; Pescucci C; Marseglia G; Severgnini M; Torricelli F; Magi A
    Bioinformatics; 2012 Dec; 28(24):3232-9. PubMed ID: 23093608
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Bioinformatics Pipeline for Transcriptome Sequencing Analysis.
    Djebali S; Wucher V; Foissac S; Hitte C; Corre E; Derrien T
    Methods Mol Biol; 2017; 1468():201-19. PubMed ID: 27662878
    [TBL] [Abstract][Full Text] [Related]  

  • 13. SOAPfusion: a robust and effective computational fusion discovery tool for RNA-seq reads.
    Wu J; Zhang W; Huang S; He Z; Cheng Y; Wang J; Lam TW; Peng Z; Yiu SM
    Bioinformatics; 2013 Dec; 29(23):2971-8. PubMed ID: 24123671
    [TBL] [Abstract][Full Text] [Related]  

  • 14. cCLIP-Seq: Retrieval of Chimeric Reads from HITS-CLIP (CLIP-Seq) Libraries.
    Alexiou P; Maragkakis M; Mourelatos Z; Vourekas A
    Methods Mol Biol; 2018; 1680():87-100. PubMed ID: 29030843
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Fcirc: A comprehensive pipeline for the exploration of fusion linear and circular RNAs.
    Cai Z; Xue H; Xu Y; Köhler J; Cheng X; Dai Y; Zheng J; Wang H
    Gigascience; 2020 Jun; 9(6):. PubMed ID: 32470133
    [TBL] [Abstract][Full Text] [Related]  

  • 16. ChimeRScope: a novel alignment-free algorithm for fusion transcript prediction using paired-end RNA-Seq data.
    Li Y; Heavican TB; Vellichirammal NN; Iqbal J; Guda C
    Nucleic Acids Res; 2017 Jul; 45(13):e120. PubMed ID: 28472320
    [TBL] [Abstract][Full Text] [Related]  

  • 17. FusionMap: detecting fusion genes from next-generation sequencing data at base-pair resolution.
    Ge H; Liu K; Juan T; Fang F; Newman M; Hoeck W
    Bioinformatics; 2011 Jul; 27(14):1922-8. PubMed ID: 21593131
    [TBL] [Abstract][Full Text] [Related]  

  • 18. HGT-ID: an efficient and sensitive workflow to detect human-viral insertion sites using next-generation sequencing data.
    Baheti S; Tang X; O'Brien DR; Chia N; Roberts LR; Nelson H; Boughey JC; Wang L; Goetz MP; Kocher JA; Kalari KR
    BMC Bioinformatics; 2018 Jul; 19(1):271. PubMed ID: 30016933
    [TBL] [Abstract][Full Text] [Related]  

  • 19. New chimeric RNAs in acute myeloid leukemia.
    Rufflé F; Audoux J; Boureux A; Beaumeunier S; Gaillard JB; Bou Samra E; Megarbane A; Cassinat B; Chomienne C; Alves R; Riquier S; Gilbert N; Lemaitre JM; Bacq-Daian D; Bougé AL; Philippe N; Commes T
    F1000Res; 2017; 6():. PubMed ID: 29623188
    [No Abstract]   [Full Text] [Related]  

  • 20. Identification of Fusion Transcripts from Unaligned RNA-Seq Reads Using ChimeRScope.
    Vellichirammal NN; Albahrani A; Li Y; Guda C
    Methods Mol Biol; 2020; 2079():13-25. PubMed ID: 31728959
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 6.