These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

448 related articles for article (PubMed ID: 29571299)

  • 41. Differential splicing analysis based on isoforms expression with NBSplice.
    Merino GA; Fernández EA
    J Biomed Inform; 2020 Mar; 103():103378. PubMed ID: 31972288
    [TBL] [Abstract][Full Text] [Related]  

  • 42. ORMAN: optimal resolution of ambiguous RNA-Seq multimappings in the presence of novel isoforms.
    Dao P; Numanagić I; Lin YY; Hach F; Karakoc E; Donmez N; Collins C; Eichler EE; Sahinalp SC
    Bioinformatics; 2014 Mar; 30(5):644-51. PubMed ID: 24130305
    [TBL] [Abstract][Full Text] [Related]  

  • 43. Identifying differential alternative splicing events from RNA sequencing data using RNASeq-MATS.
    Park JW; Tokheim C; Shen S; Xing Y
    Methods Mol Biol; 2013; 1038():171-9. PubMed ID: 23872975
    [TBL] [Abstract][Full Text] [Related]  

  • 44. spliceR: an R package for classification of alternative splicing and prediction of coding potential from RNA-seq data.
    Vitting-Seerup K; Porse BT; Sandelin A; Waage J
    BMC Bioinformatics; 2014 Mar; 15():81. PubMed ID: 24655717
    [TBL] [Abstract][Full Text] [Related]  

  • 45. rMATS: robust and flexible detection of differential alternative splicing from replicate RNA-Seq data.
    Shen S; Park JW; Lu ZX; Lin L; Henry MD; Wu YN; Zhou Q; Xing Y
    Proc Natl Acad Sci U S A; 2014 Dec; 111(51):E5593-601. PubMed ID: 25480548
    [TBL] [Abstract][Full Text] [Related]  

  • 46. Quantitative visualization of alternative exon expression from RNA-seq data.
    Katz Y; Wang ET; Silterra J; Schwartz S; Wong B; Thorvaldsdóttir H; Robinson JT; Mesirov JP; Airoldi EM; Burge CB
    Bioinformatics; 2015 Jul; 31(14):2400-2. PubMed ID: 25617416
    [TBL] [Abstract][Full Text] [Related]  

  • 47. Comparative analysis of RNA-Seq alignment algorithms and the RNA-Seq unified mapper (RUM).
    Grant GR; Farkas MH; Pizarro AD; Lahens NF; Schug J; Brunk BP; Stoeckert CJ; Hogenesch JB; Pierce EA
    Bioinformatics; 2011 Sep; 27(18):2518-28. PubMed ID: 21775302
    [TBL] [Abstract][Full Text] [Related]  

  • 48. SplicingTypesAnno: annotating and quantifying alternative splicing events for RNA-Seq data.
    Sun X; Zuo F; Ru Y; Guo J; Yan X; Sablok G
    Comput Methods Programs Biomed; 2015 Apr; 119(1):53-62. PubMed ID: 25720307
    [TBL] [Abstract][Full Text] [Related]  

  • 49. Prediction of transcript structure and concentration using RNA-Seq data.
    Sharma H; Pani T; Dasgupta U; Batra J; Sharma RD
    Brief Bioinform; 2023 Mar; 24(2):. PubMed ID: 36682028
    [TBL] [Abstract][Full Text] [Related]  

  • 50. Read-Split-Run: an improved bioinformatics pipeline for identification of genome-wide non-canonical spliced regions using RNA-Seq data.
    Bai Y; Kinne J; Donham B; Jiang F; Ding L; Hassler JR; Kaufman RJ
    BMC Genomics; 2016 Aug; 17 Suppl 7(Suppl 7):503. PubMed ID: 27556805
    [TBL] [Abstract][Full Text] [Related]  

  • 51. A comprehensive benchmarking of differential splicing tools for RNA-seq analysis at the event level.
    Jiang M; Zhang S; Yin H; Zhuo Z; Meng G
    Brief Bioinform; 2023 May; 24(3):. PubMed ID: 37020334
    [TBL] [Abstract][Full Text] [Related]  

  • 52. SpliceTrap: a method to quantify alternative splicing under single cellular conditions.
    Wu J; Akerman M; Sun S; McCombie WR; Krainer AR; Zhang MQ
    Bioinformatics; 2011 Nov; 27(21):3010-6. PubMed ID: 21896509
    [TBL] [Abstract][Full Text] [Related]  

  • 53. IRcall and IRclassifier: two methods for flexible detection of intron retention events from RNA-Seq data.
    Bai Y; Ji S; Wang Y
    BMC Genomics; 2015; 16 Suppl 2(Suppl 2):S9. PubMed ID: 25707295
    [TBL] [Abstract][Full Text] [Related]  

  • 54. Annotation-free quantification of RNA splicing using LeafCutter.
    Li YI; Knowles DA; Humphrey J; Barbeira AN; Dickinson SP; Im HK; Pritchard JK
    Nat Genet; 2018 Jan; 50(1):151-158. PubMed ID: 29229983
    [TBL] [Abstract][Full Text] [Related]  

  • 55. Single-cell long-read sequencing in human cerebral organoids uncovers cell-type-specific and autism-associated exons.
    Yang Y; Yang R; Kang B; Qian S; He X; Zhang X
    Cell Rep; 2023 Nov; 42(11):113335. PubMed ID: 37889749
    [TBL] [Abstract][Full Text] [Related]  

  • 56. SigFuge: single gene clustering of RNA-seq reveals differential isoform usage among cancer samples.
    Kimes PK; Cabanski CR; Wilkerson MD; Zhao N; Johnson AR; Perou CM; Makowski L; Maher CA; Liu Y; Marron JS; Hayes DN
    Nucleic Acids Res; 2014 Aug; 42(14):e113. PubMed ID: 25030904
    [TBL] [Abstract][Full Text] [Related]  

  • 57. Characterization of kinase gene expression and splicing profile in prostate cancer with RNA-Seq data.
    Feng H; Li T; Zhang X
    BMC Genomics; 2018 Aug; 19(Suppl 6):564. PubMed ID: 30367578
    [TBL] [Abstract][Full Text] [Related]  

  • 58. Prediction of alternative isoforms from exon expression levels in RNA-Seq experiments.
    Richard H; Schulz MH; Sultan M; Nürnberger A; Schrinner S; Balzereit D; Dagand E; Rasche A; Lehrach H; Vingron M; Haas SA; Yaspo ML
    Nucleic Acids Res; 2010 Jun; 38(10):e112. PubMed ID: 20150413
    [TBL] [Abstract][Full Text] [Related]  

  • 59. rMAPS2: an update of the RNA map analysis and plotting server for alternative splicing regulation.
    Hwang JY; Jung S; Kook TL; Rouchka EC; Bok J; Park JW
    Nucleic Acids Res; 2020 Jul; 48(W1):W300-W306. PubMed ID: 32286627
    [TBL] [Abstract][Full Text] [Related]  

  • 60. SimSpliceEvol: alternative splicing-aware simulation of biological sequence evolution.
    Kuitche E; Jammali S; Ouangraoua A
    BMC Bioinformatics; 2019 Dec; 20(Suppl 20):640. PubMed ID: 31842741
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 23.