These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
166 related articles for article (PubMed ID: 29588650)
1. Outlier detection in BLAST hits. Shah N; Altschul SF; Pop M Algorithms Mol Biol; 2018; 13():7. PubMed ID: 29588650 [TBL] [Abstract][Full Text] [Related]
2. How reliable is metabarcoding for pollen identification? An evaluation of different taxonomic assignment strategies by cross-validation. San Martin G; Hautier L; Mingeot D; Dubois B PeerJ; 2024; 12():e16567. PubMed ID: 38313030 [TBL] [Abstract][Full Text] [Related]
3. A Bayesian taxonomic classification method for 16S rRNA gene sequences with improved species-level accuracy. Gao X; Lin H; Revanna K; Dong Q BMC Bioinformatics; 2017 May; 18(1):247. PubMed ID: 28486927 [TBL] [Abstract][Full Text] [Related]
4. TaxAss: Leveraging a Custom Freshwater Database Achieves Fine-Scale Taxonomic Resolution. Rohwer RR; Hamilton JJ; Newton RJ; McMahon KD mSphere; 2018 Sep; 3(5):. PubMed ID: 30185512 [TBL] [Abstract][Full Text] [Related]
5. Classifying short genomic fragments from novel lineages using composition and homology. Parks DH; MacDonald NJ; Beiko RG BMC Bioinformatics; 2011 Aug; 12():328. PubMed ID: 21827705 [TBL] [Abstract][Full Text] [Related]
6. Using the RDP classifier to predict taxonomic novelty and reduce the search space for finding novel organisms. Lan Y; Wang Q; Cole JR; Rosen GL PLoS One; 2012; 7(3):e32491. PubMed ID: 22403664 [TBL] [Abstract][Full Text] [Related]
7. TaxMan: a taxonomic database manager. Jones M; Blaxter M BMC Bioinformatics; 2006 Dec; 7():536. PubMed ID: 17176465 [TBL] [Abstract][Full Text] [Related]
8. SOrt-ITEMS: Sequence orthology based approach for improved taxonomic estimation of metagenomic sequences. Monzoorul Haque M; Ghosh TS; Komanduri D; Mande SS Bioinformatics; 2009 Jul; 25(14):1722-30. PubMed ID: 19439565 [TBL] [Abstract][Full Text] [Related]
9. Short branches lead to systematic artifacts when BLAST searches are used as surrogate for phylogenetic reconstruction. Dick AA; Harlow TJ; Gogarten JP Mol Phylogenet Evol; 2017 Feb; 107():338-344. PubMed ID: 27894995 [TBL] [Abstract][Full Text] [Related]
10. Construction & assessment of a unified curated reference database for improving the taxonomic classification of bacteria using 16S rRNA sequence data. Agnihotry S; Sarangi AN; Aggarwal R Indian J Med Res; 2020 Jan; 151(1):93-103. PubMed ID: 32134020 [TBL] [Abstract][Full Text] [Related]
11. Stratification of co-evolving genomic groups using ranked phylogenetic profiles. Freilich S; Goldovsky L; Gottlieb A; Blanc E; Tsoka S; Ouzounis CA BMC Bioinformatics; 2009 Oct; 10():355. PubMed ID: 19860884 [TBL] [Abstract][Full Text] [Related]
12. BLAST-based validation of metagenomic sequence assignments. Bazinet AL; Ondov BD; Sommer DD; Ratnayake S PeerJ; 2018; 6():e4892. PubMed ID: 29868286 [TBL] [Abstract][Full Text] [Related]
13. Accurate and fast estimation of taxonomic profiles from metagenomic shotgun sequences. Liu B; Gibbons T; Ghodsi M; Treangen T; Pop M BMC Genomics; 2011; 12 Suppl 2(Suppl 2):S4. PubMed ID: 21989143 [TBL] [Abstract][Full Text] [Related]
14. SPANNER: taxonomic assignment of sequences using pyramid matching of similarity profiles. Porter MS; Beiko RG Bioinformatics; 2013 Aug; 29(15):1858-64. PubMed ID: 23732273 [TBL] [Abstract][Full Text] [Related]
15. Deep learning models for bacteria taxonomic classification of metagenomic data. Fiannaca A; La Paglia L; La Rosa M; Lo Bosco G; Renda G; Rizzo R; Gaglio S; Urso A BMC Bioinformatics; 2018 Jul; 19(Suppl 7):198. PubMed ID: 30066629 [TBL] [Abstract][Full Text] [Related]
16. TIPP: taxonomic identification and phylogenetic profiling. Nguyen NP; Mirarab S; Liu B; Pop M; Warnow T Bioinformatics; 2014 Dec; 30(24):3548-55. PubMed ID: 25359891 [TBL] [Abstract][Full Text] [Related]