177 related articles for article (PubMed ID: 29592900)
1. Genome Sequencing and RNA-Motif Analysis Reveal Novel Damaging Noncoding Mutations in Human Tumors.
Singh B; Trincado JL; Tatlow PJ; Piccolo SR; Eyras E
Mol Cancer Res; 2018 Jul; 16(7):1112-1124. PubMed ID: 29592900
[TBL] [Abstract][Full Text] [Related]
2. Why Selection Might Be Stronger When Populations Are Small: Intron Size and Density Predict within and between-Species Usage of Exonic Splice Associated cis-Motifs.
Wu X; Hurst LD
Mol Biol Evol; 2015 Jul; 32(7):1847-61. PubMed ID: 25771198
[TBL] [Abstract][Full Text] [Related]
3. A deep boosting based approach for capturing the sequence binding preferences of RNA-binding proteins from high-throughput CLIP-seq data.
Li S; Dong F; Wu Y; Zhang S; Zhang C; Liu X; Jiang T; Zeng J
Nucleic Acids Res; 2017 Aug; 45(14):e129. PubMed ID: 28575488
[TBL] [Abstract][Full Text] [Related]
4. Mutational landscape of RNA-binding proteins in human cancers.
Neelamraju Y; Gonzalez-Perez A; Bhat-Nakshatri P; Nakshatri H; Janga SC
RNA Biol; 2018 Jan; 15(1):115-129. PubMed ID: 29023197
[TBL] [Abstract][Full Text] [Related]
5. rMAPS: RNA map analysis and plotting server for alternative exon regulation.
Park JW; Jung S; Rouchka EC; Tseng YT; Xing Y
Nucleic Acids Res; 2016 Jul; 44(W1):W333-8. PubMed ID: 27174931
[TBL] [Abstract][Full Text] [Related]
6. A Genetic Screen for Pre-mRNA Splicing Mutants of
Kanno T; Lin WD; Fu JL; Chang CL; Matzke AJM; Matzke M
Genetics; 2017 Dec; 207(4):1347-1359. PubMed ID: 28971960
[TBL] [Abstract][Full Text] [Related]
7. Impact of cancer mutational signatures on transcription factor motifs in the human genome.
Yiu Chan CW; Gu Z; Bieg M; Eils R; Herrmann C
BMC Med Genomics; 2019 May; 12(1):64. PubMed ID: 31109337
[TBL] [Abstract][Full Text] [Related]
8. Analysis RNA-seq and Noncoding RNA.
Arrigoni A; Ranzani V; Rossetti G; Panzeri I; Abrignani S; Bonnal RJ; Pagani M
Methods Mol Biol; 2016; 1480():125-35. PubMed ID: 27659980
[TBL] [Abstract][Full Text] [Related]
9. CELF1 preferentially binds to exon-intron boundary and regulates alternative splicing in HeLa cells.
Xia H; Chen D; Wu Q; Wu G; Zhou Y; Zhang Y; Zhang L
Biochim Biophys Acta Gene Regul Mech; 2017 Sep; 1860(9):911-921. PubMed ID: 28733224
[TBL] [Abstract][Full Text] [Related]
10. Beyond the exome: the role of non-coding somatic mutations in cancer.
Piraino SW; Furney SJ
Ann Oncol; 2016 Feb; 27(2):240-8. PubMed ID: 26598542
[TBL] [Abstract][Full Text] [Related]
11. Read-Split-Run: an improved bioinformatics pipeline for identification of genome-wide non-canonical spliced regions using RNA-Seq data.
Bai Y; Kinne J; Donham B; Jiang F; Ding L; Hassler JR; Kaufman RJ
BMC Genomics; 2016 Aug; 17 Suppl 7(Suppl 7):503. PubMed ID: 27556805
[TBL] [Abstract][Full Text] [Related]
12. Depletion of somatic mutations in splicing-associated sequences in cancer genomes.
Hurst LD; Batada NN
Genome Biol; 2017 Nov; 18(1):213. PubMed ID: 29115978
[TBL] [Abstract][Full Text] [Related]
13. The combinatorial control of alternative splicing in C. elegans.
Tan JH; Fraser AG
PLoS Genet; 2017 Nov; 13(11):e1007033. PubMed ID: 29121637
[TBL] [Abstract][Full Text] [Related]
14. Matrix-screening reveals a vast potential for direct protein-protein interactions among RNA binding proteins.
Lang B; Yang JS; Garriga-Canut M; Speroni S; Aschern M; Gili M; Hoffmann T; Tartaglia GG; Maurer SP
Nucleic Acids Res; 2021 Jul; 49(12):6702-6721. PubMed ID: 34133714
[TBL] [Abstract][Full Text] [Related]
15. Integrative Analysis of Somatic Mutations in Non-coding Regions Altering RNA Secondary Structures in Cancer Genomes.
He F; Wei R; Zhou Z; Huang L; Wang Y; Tang J; Zou Y; Shi L; Gu X; Davis MJ; Su Z
Sci Rep; 2019 Jun; 9(1):8205. PubMed ID: 31160636
[TBL] [Abstract][Full Text] [Related]
16. Identification and analysis of splicing quantitative trait loci across multiple tissues in the human genome.
Garrido-Martín D; Borsari B; Calvo M; Reverter F; Guigó R
Nat Commun; 2021 Feb; 12(1):727. PubMed ID: 33526779
[TBL] [Abstract][Full Text] [Related]
17. Cancer-Associated Perturbations in Alternative Pre-messenger RNA Splicing.
Shkreta L; Bell B; Revil T; Venables JP; Prinos P; Elela SA; Chabot B
Cancer Treat Res; 2013; 158():41-94. PubMed ID: 24222354
[TBL] [Abstract][Full Text] [Related]
18. Large-scale analysis of genome and transcriptome alterations in multiple tumors unveils novel cancer-relevant splicing networks.
Sebestyén E; Singh B; Miñana B; Pagès A; Mateo F; Pujana MA; Valcárcel J; Eyras E
Genome Res; 2016 Jun; 26(6):732-44. PubMed ID: 27197215
[TBL] [Abstract][Full Text] [Related]
19. Prevalent RNA recognition motif duplication in the human genome.
Tsai YS; Gomez SM; Wang Z
RNA; 2014 May; 20(5):702-12. PubMed ID: 24667216
[TBL] [Abstract][Full Text] [Related]
20. Leveraging cross-link modification events in CLIP-seq for motif discovery.
Bahrami-Samani E; Penalva LO; Smith AD; Uren PJ
Nucleic Acids Res; 2015 Jan; 43(1):95-103. PubMed ID: 25505146
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]